| At line 2 added 4 lines. |
| + __Organize!__ |
| + * Draw dependency diagram of tasks with names (wiki) - get input from responsible parties (Aimee, Thau) |
| + * Add API calls to WIKI page next to WSDL link, update as needed (Aimee - DONE) |
| + |
| At line 4 added 1 line. |
| + ** Pre: Decide on version of TCS to work from for now (Trevor, Aimee) |
| Removed line 7 |
| - * add MSW data, changes over time, in TCS format |
| Line 9 was replaced by lines 13-15 |
| - |
| + * Integrate LSID server (Thau, Robert, Aimee) |
| + * add MSW data, changes over time, in TCS format |
| + |
| Lines 13-24 were replaced by line 19 |
| - * Integrate LSID server into |
| - |
| - __Visualization Browsing and Editing Tools__ |
| - * Browser within 6 mos |
| - * Editing within 9 months? |
| - * What kind of editing tools are needed? |
| - ** single concept |
| - ** batch addition, editing |
| - * Should we have seperate tools? There should be coordination between the 2 - not different displays for user to view |
| - * How does current work fit in? |
| - ** Xianhua's TaCBE tool, browsing and editing - where does this fit in? |
| - ** Napier's (Martin) visualization tool for tree comparison - doesn't edit |
| + * Algorithms (Aimee, Robert, experts) |
| Lines 26-32 were replaced by lines 21-45 |
| - __Dataset markup tools__ |
| - * modification of EML taxonomic section |
| - * allow manual markup of dataset metadata |
| - * auto markup |
| - |
| - __Napier__ |
| - * tool to define mappings from other dbs to TCS |
| + __TCS work__ |
| + * Jessie will meet with Paul Kirk to discuss variation in valid name types and generate an appropriate schema with list of examples (2 weeks)(Name Work) |
| + * Map between TCS, DarwinCore, EML (Trevor) |
| + *** Pre: Name Work above |
| + |
| + __Tools: Visualization, Browsing, and Editing Tools__ |
| + * Bob, Nico and Xianhua will summarize issues on wiki (2 weeks) |
| + ** 3 timeframes (January, semi-short, long) |
| + ** look at Napier work/proposal and see if/how they can work together |
| + ** Who are the users of each tool? |
| + ** Use cases for Tools |
| + * Should we have seperate browsing/editing tools? There should be coordination between the 2 - not different displays for user to view |
| + * Tool for marking up EML datasets with concepts |
| + ** Pre: modification of EML taxonomic section |
| + ** manual/auto markup of dataset metadata |
| + * Tool for adding relationships between existing concepts |
| + ** How does current work fit in? |
| + *** Napier's (Martin) visualization tool for tree comparison - doesn't edit |
| + *** Xianhua's TaCBE tool, browsing and editing - where does this fit in? |
| + * Tool for creating new concepts |
| + ** What kind of editing tools are needed? |
| + *** single concept |
| + *** batch addition, editing |
| + ** User Guide: Walk the experts through the concept creation steps() |
| + * Tool to define mappings from other dbs to TCS (Trevor) |
| Lines 41-43 were replaced by lines 54-56 |
| - ** Populate concepts for those taxa |
| - ** Experts to help map relationships b/w concepts we get (who?) |
| - ** Nico will help from Taxonomic perspective |
| + ** Experts to help map relationships b/w historical concepts (who?) |
| + *** Pre: Broad guidelines first, then experts will help modify. Example driven guidelines for experts - beginning of User Guide (Nico, Trevor, Bob, Jessie) |
| + ** Create TCS doc for import of concept data into SEEK Taxon cache (Nico, Jessie) |
| At line 45 added 9 lines. |
| + * Dataset annotation (learning step) |
| + ** Test concept dataset generation (name, source) (Jessie, Trevor, Thau) |
| + ** Generate LSIDs for the concepts within (Thau) |
| + ** Annotation of EML with test concepts (Matt, Thau) |
| + ** Maybe use controlled vocabulary (Smithsonian?) |
| + |
| + * Integrate functionality of TOS with Kepler (Robert, Aimee, Thau) |
| + ** Learn Kepler |
| + ** Determine what actors to build |
| Lines 47-56 were replaced by lines 69-70 |
| - * Need links between APIs and Ecogrid |
| - ** Reindex existing datasets - ecological and specimen records, modify EML records |
| - ** Query with name for concepts then datasets fro concepts |
| - |
| - * Identify mechanism/plan for any given scientific study |
| - ** Formulate plan |
| - ** Walk the experts through the concept creation steps |
| - * Create TCS doc for import into SEEK Taxon cache (Nico, Jessie) |
| - * historical concepts/relationships |
| - * integrate functionality of TOS with Ecogrid |
| + __LONG Term__ |
| + * integrate TOS with Ecogrid |
| Lines 58-59 were replaced by line 72 |
| - ** term expansion in client for now |
| - ** smart searching - currently divided into 2 searches, need to integrate SMS and Taxonn searching, Shawn thinks - bring it in locally |
| + *** smart searching - currently divided into 2 searches, need to integrate SMS and Taxon searching |
| Removed line 61 |
| - ** How do we annotate datasets - metadata generation |
| Line 63 was replaced by line 75 |
| - * Modify taxonomic part of EML |
| + * Modify taxonomic part of EML (Matt, Jessie) |
| At line 65 added 1 line. |
| + *** Pre: Name Work above |
| Lines 68-71 were replaced by lines 81-86 |
| - ** Maybe use controlled vocabulary (Smithsonian?) |
| - |
| - * Modify Morpho tool which is pulling taxonomic names/info from datasets to use TOS for concept matching |
| - ** Ecological datasets vs specimen datasets |
| + * Integrate dataset annotation with TOS |
| + ** Pre: SMS annotation for smart data discovery |
| + ** Pre: EML modification |
| + ** 2 types: Ecological datasets vs specimen datasets |
| + ** How do we annotate datasets - metadata generation |
| + ** Modify Morpho tool which is pulling taxonomic names/info from datasets to use TOS for concept matching |
| At line 72 added 1 line. |
| + |
| Lines 76-77 were replaced by lines 92-98 |
| - * Map between TCS, DarwinCore, EML (Jessie) |
| - |
| + __Publications__ |
| + * concept language - Nico, Bob, Jessie (1 month) |
| + * for Ecologists - Trevor, Bob, Nico () |
| + * General SEEK Taxon paper, where the field is going (Beach) (not begun) |
| + * QRB (submitted) |
| + * Concepts and GUIDs (Systematics Biology - Nico, Thau, Jessie) (3 months for internal review) |
| + * Technical aspects of concepts and GUIDs (Thau and ??) (not begun) |
