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KRSMS March 2007
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- !!KR/SMS Annotation & Domain-Extension Ontology Meeting
+ !!!KR/SMS Annotation & Domain-Extension Ontology Meeting
Lines 3-56 were replaced by lines 3-107
- !Meeting Date and Location
- * April 4-6, 2007
- * NCEAS, Santa Barbara
-
-
- !Meeting Goals
- * Annotate a select corpus of data sets based on OBOE
- * Define domain extensions (ontologies for entities, characteristics, units) needed for annotating the corpus
-
-
- !Target Data sets
- ||''Data/Metadata''||''Publisher''||''Comment''
- |[PLT-GCEM-0511a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCEM-0511a]|GCE|Plant Ecology: Biomass from Shoot Height and Flowering Status
- |[PLT-GCEM-0511b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCEM-0511b]|GCE|Plant Ecology: Biomass from Shoot Height and Flowering Status (w/ Biomass)
- |[PLT-GCED-0409|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCED-0409]|GCE|Plant Ecology: Community Response to Fertilization
- |[PLT-GCET-0608|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCET-0608]|GCE|Plant Ecology: Plant Richness Survey
- |[INS-GCEM-0511|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=INS-GCEM-0511]|GCE|Terrestrial Insect Ecology: Grasshopper Abundance and Species Diversity
- |[INV-GCEM-0511|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=INV-GCEM-0511]|GCE|Aquatic Invertebrate Ecology: Crab Abundance based on Crab Hole Counts
- |[INV-GCEM-0501a1|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=INV-GCEM-0501a1]|GCE|Aquatic Invertebrate Ecology: Infaunal and Epifaunal Mollusc Abundance
- |[INV-GCEM-0501a2|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=INV-GCEM-0501a2]|GCE|Aquatic Invertebrate Ecology: Infaunal and Epifaunal Mollusc Size Distributions
- |[FNG-GCEM-0401|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=FNG-GCEM-0401]|GCE|Fungal Productivity: Ergosterol Content and Ascospore Release Rates
- |[BCT-GCEM-0511a2|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=BCT-GCEM-0511a2]|GCE|Bacterial Productivity: Surface Water Bacterial Productivity
- |[PHP-GCEM-0511a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PHP-GCEM-0511a]|GCE|Phytoplankton Productivity: Surface Water Phytoplankton Productivity
- |[ALG-GCED-0304a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ALG-GCED-0304a]|GCE|Algal Productivity: Benthic Chlorophyll Concentrations and Gross Oxygenic Photosynthesis Rates
- |[ALG-GCED-0304c|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ALG-GCED-0304c]|GCE|Algal Productivity: Benthic Chlorophyll, Density, Porosity, Organic Content Concentrations, and Gross Oxygenic Photosynthesis Rates
- |[MET-GCEM-0508a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=MET-GCES-0508a]|GCE|Meteorology: Annual Summaries of Daily Air Temperature and Precipitation
- |[HYD-GCES-0508a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=HYD-GCES-0508a]|GCE|Hydrography: Annual Summaries of Daily Averaged River Discharge
- |[HYD-GCES-0508b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=HYD-GCES-0508b]|GCE|Hydrography: Monthly Mean Water Levels
- |[PHY-GCEM-0612a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PHY-GCEM-0612a]|GCE|Continuous Salinity, Temperature and Depth
- |[PHY-GCEM-0406a1|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?Accession=PHY-GCEM-0406a1]|GCE|Physical Oceanography: Bin-Averaged CTD Profiles
- |[PHY-GCEM-0406a2|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PHY-GCEM-0406a2]|GCE|Physical Oceanography: CTD, PAR, Oxygen, and Chlorophyll Profiles
- |[GEL-GCEM-0508a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=GEL-GCEM-0508a]|GCE|Geology: Soil Characteristics
- |[GEL-GCEM-0508b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=GEL-GCEM-0508b]|GCE|Geology: Soil Surface Elevation
- |[GEL-GCEM-0508c|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=GEL-GCEM-0508c]|GCE|Geology: Soil Accretion
- |[ORG-GCEM-0511a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ORG-GCEM-0511a]|GCE|Organic Matter/Decomposition: Surface Water Dissolved Organic Carbon Concentrations
- |[ORG-GCEM-0508a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ORG-GCEM-0508a]|GCE|Organic Matter/Decomposition: Soil temperature and respiration
- |[ORG-GCEM-0508b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ORG-GCEM-0508b]|GCE|Organic Matter/Decomposition: Rates of Decompisition and Root In-Growth
- |[ORG-GCEM-0101|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ORG-GCEM-0101]|GCE|Organic Matter/Decomposition: Ash-Free Dry Weight Analysis for Soil Samples
- |[CHM-GCED-0303a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=CHM-GCED-0303a]|GCE|Chemistry: Surface Water Samples for Total Dissolved Inorganic Carbon, Total Alkalinity, and pH
- |[POR-GCED-0210|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=POR-GCED-0210]|GCE|Pore-water Chemistry: Porewater Nutrients, Dissolved Organics, Redox Species, and Gasses in Estuarine Intertidal Sediments
- |[NUT-GCEM-0210|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=NUT-GCEM-0210]|GCE|General Nutrient Chemistry: Water Quality Monitoring
- |[NUT-GCEM-0206|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=NUT-GCEM-0206]|GCE|General Nutrient Chemistry: Water Column Particulate Carbon and Nitrogen Concentrations
- |||
- |[2002lgcover|http://ecosystems.mbl.edu/ARC/terrest/biomass/2002lgcover.html]|ARC|Relative percent cover was measured in moist acidic and moist non-acidic tundra
- |[2002gsttbm|http://ecosystems.mbl.edu/ARC/terrest/biomass/2002gsttbm.html]|ARC|Above ground plant and below ground stem biomass in acidic tussock tundra
- |[2001lgshttcn|http://ecosystems.mbl.edu/ARC/terrest/biomass/2001lgshttcn.html]|ARC|Percent carbon and percent nitrogen of above ground plant and belowground stem biomass samples in moist acidic and moist non-acidic tundra
- |[2001gswsbm_n|http://ecosystems.mbl.edu/ARC/terrest/biomass/2001gswsbm_n.html]|ARC|Biomass, nitrogen and carbon of plants in wet sedge tundra
- |[2000gsla|http://ecosystems.mbl.edu/ARC/terrest/biomass/2000gsla.html]|ARC|Leaf area for select species was measured in arctic tundra
- |[1999SHretrans|http://ecosystems.mbl.edu/ARC/terrest/biomass/1999SHretrans.html]|ARC|Foliar and litter nutrients and retranslocation efficiencies for dominant species on moist acidic and non-acidic tundra
- |||
- |[dataset269|http://caplter.asu.edu/home/products/showDataset.jsp?keyword=Human%20Control%20of%20Biodiversity&id=269]|CAP|Historic Landuse
- |[dataset276|http://caplter.asu.edu/home/products/showDataset.jsp?keyword=Human%20Control%20of%20Biodiversity&id=276]|CAP|Human
- |[dataset43|http://caplter.asu.edu/home/products/showDataset.jsp?keyword=Human%20Control%20of%20Biodiversity&id=43]|CAP|Transect Bird Survey with Data Synthesis]
- |[dataset39|http://caplter.asu.edu/home/products/showDataset.jsp?keyword=Fluxes%20of%20Materials%20and%20Socio-Ecosystem%20Response&id=39]|CAP|Lichen Resurvey with Heavy Metal Analysis
+ !!Meeting Date and Location
+ *Where: Room 201 on the second floor of NCEAS, Santa Barbara, California (805-892-2500)
+ *Hotel: Holiday Inn, Santa Barbara
+ **From the airport, you may book SuperRide Airport Shuttle (805-683-9636) or take a cab. A cab is $30-$35 one way (I think). If you have any problems, call Josh on 805-452-7017.
+ *When: April Wednesday 4 to Friday 6, 2007 -- Arriving on Tuesday 3
+ *Reimbursements: [http://lternet-183.lternet.edu/doc_archive/forms/], forms will be given out on the first day.
+
+ ! The meeting will begin promptly at 8:00 am in the 2nd floor conference room at NCEAS in the Balboa Building, 735 State Street.
+
+ !!Meeting Goals
+ ! Define domain extensions ontologies based on select corpus of data sets
+ * The first goal of the meeting will be to extract terms and concepts from a corpus of data sets ranging in their similarities and differences.
+ * An OBOE extension ontology will be built from these terms and concepts
+ ! Annotate corpus of data sets based on OBOE
+ * The second goal will be to annotate the corpus of data sets using the new extension ontology.
+ * We will then hopefully demonstrate (or at least discuss) the process of discoverying and integrating these data sets based on their annotations with extension ontology terms.
+
+ !! Schedule
+
+ | ||Wednesday || Thursday || Friday
+ | ''8:00'' | ''Coffee'' | ''Coffee'' | ''Coffee''
+ | __8:15__ | Meeting agenda and goals \\ Select dataset corpus | continued | Discussion about directions/responsibilities before end of SEEK project
+ | ''10:15'' | ''Break'' | ''Break'' | ''Break''
+ | __10:30__ | Current OBOE status \\ Current extension ontologies (units, entities, characteristics) \\ Top-level organization for extensions | continued | Discussion about publishing KR work
+ | ''12:30'' | ''Lunch'' | ''Lunch'' | ''Lunch''
+ | __1:30__ | Select datasets to annotate \\ Identify terms and concepts \\ Refine extensions \\ Define annotation | continued | __Departures__
+ | ''3:15'' | ''Break'' | ''Break'' |
+ | __3:30__ | continued | Review of data set annotations and discussion about leveraging annotations for data discovery and integration |
+ | ''5:00'' | ''Finish'' | ''Finish'' |
+
+
+ !!Target Data sets
+ * __Comment (JSM)__: We probably want to cut down on the number of data sets in the corpus. I think that ideally we should attempt to cover as many different data set types as possible, but also have several examples of similar/overlapping data sets which can be used for testing/discussion of semantic utilies (e.g., data merging).
+ ||''Data/Metadata''|| ''Status''||''Comment''
+ |__GCE__|||
+ |[PLT-GCEM-0511a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCEM-0511a]|Y+|Plant Ecology: Biomass from Shoot Height and Flowering Status
+ |[PLT-GCEM-0511b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCEM-0511b]|Y+|Plant Ecology: Biomass from Shoot Height and Flowering Status (w/ Biomass)
+ |[PLT-GCEM-0211b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCEM-0211b]|Y+|Plant allometry at GCE sampling sites 1-10 in October, 2002
+ |[PLT-GCED-0409|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCED-0409]|Y+|Plant Ecology: Community Response to Fertilization
+ |[PLT-GCET-0608|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PLT-GCET-0608]|Y|Plant Ecology: Plant Richness Survey
+ |[INS-GCEM-0511|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=INS-GCEM-0511]|Y+|Terrestrial Insect Ecology: Grasshopper Abundance and Species Diversity
+ |[INV-GCEM-0511|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=INV-GCEM-0511]|Y+|Aquatic Invertebrate Ecology: Crab Abundance based on Crab Hole Counts
+ |[INV-GCEM-0501a1|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=INV-GCEM-0501a1]|Y+|Aquatic Invertebrate Ecology: Infaunal and Epifaunal Mollusc Abundance
+ |[INV-GCEM-0501a2|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=INV-GCEM-0501a2]|Y+|Aquatic Invertebrate Ecology: Infaunal and Epifaunal Mollusc Size Distributions
+ |[FNG-GCEM-0401|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=FNG-GCEM-0401]|H|Fungal Productivity: Ergosterol Content and Ascospore Release Rates
+ |[BCT-GCEM-0511a2|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=BCT-GCEM-0511a2]|H|Bacterial Productivity: Surface Water Bacterial Productivity
+ |[PHP-GCEM-0511a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PHP-GCEM-0511a]|H|Phytoplankton Productivity: Surface Water Phytoplankton Productivity
+ |[ALG-GCED-0304a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ALG-GCED-0304a]|Y|Algal Productivity: Benthic Chlorophyll Concentrations and Gross Oxygenic Photosynthesis Rates
+ |[ALG-GCED-0304c|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ALG-GCED-0304c]|H|Algal Productivity: Benthic Chlorophyll, Density, Porosity, Organic Content Concentrations, and Gross Oxygenic Photosynthesis Rates
+ |[MET-GCEM-0508a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=MET-GCES-0508a]|Y|Meteorology: Annual Summaries of Daily Air Temperature and Precipitation
+ |[HYD-GCES-0508a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=HYD-GCES-0508a]|Y+|Hydrography: Annual Summaries of Daily Averaged River Discharge
+ |[HYD-GCES-0508b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=HYD-GCES-0508b]|Y|Hydrography: Monthly Mean Water Levels
+ |[PHY-GCEM-0612a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PHY-GCEM-0612a]|Y|Continuous Salinity, Temperature and Depth
+ |[PHY-GCEM-0406a1|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?Accession=PHY-GCEM-0406a1]|H|Physical Oceanography: Bin-Averaged CTD Profiles
+ |[PHY-GCEM-0406a2|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=PHY-GCEM-0406a2]|H|Physical Oceanography: CTD, PAR, Oxygen, and Chlorophyll Profiles
+ |[GEL-GCEM-0508a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=GEL-GCEM-0508a]|H|Geology: Soil Characteristics
+ |[GEL-GCEM-0508b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=GEL-GCEM-0508b]|H|Geology: Soil Surface Elevation
+ |[GEL-GCEM-0508c|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=GEL-GCEM-0508c]|Y|Geology: Soil Accretion
+ |[ORG-GCEM-0511a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ORG-GCEM-0511a]|H|Organic Matter/Decomposition: Surface Water Dissolved Organic Carbon Concentrations
+ |[ORG-GCEM-0508a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ORG-GCEM-0508a]|Y|Organic Matter/Decomposition: Soil temperature and respiration
+ |[ORG-GCEM-0508b|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ORG-GCEM-0508b]|H|Organic Matter/Decomposition: Rates of Decompisition and Root In-Growth
+ |[ORG-GCEM-0101|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=ORG-GCEM-0101]|Y|Organic Matter/Decomposition: Ash-Free Dry Weight Analysis for Soil Samples
+ |[CHM-GCED-0303a|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=CHM-GCED-0303a]|Y|Chemistry: Surface Water Samples for Total Dissolved Inorganic Carbon, Total Alkalinity, and pH
+ |[POR-GCED-0210|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=POR-GCED-0210]|H|Pore-water Chemistry: Porewater Nutrients, Dissolved Organics, Redox Species, and Gasses in Estuarine Intertidal Sediments
+ |[NUT-GCEM-0210|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=NUT-GCEM-0210]|Y|General Nutrient Chemistry: Water Quality Monitoring
+ |[NUT-GCEM-0206|http://gce-lter.marsci.uga.edu/lter/asp/db/dataset_details.asp?accession=NUT-GCEM-0206]|H|General Nutrient Chemistry: Water Column Particulate Carbon and Nitrogen Concentrations
+ |__SBC__|||
+ |[knb-lter-sbc.18.3|http://sbcdata.lternet.edu/catalog/metacat?action=read&qformat=sbclter&docid=knb-lter-sbc.18.3&displaymodule=entity&entitytype=dataTable&entityindex=1]|Y|Abundance and size of giant kelp
+ |[knb-lter-sbc.15.2|http://sbcdata.lternet.edu/catalog/metacat?action=read&qformat=sbclter&docid=knb-lter-sbc.15.2&displaymodule=entity&entitytype=dataTable&entityindex=1]|Y|Kelp Forest Community Dynamics monitoring algae and sessile invertebrate cover data
+ |[knb-lter-sbc.17.5|http://sbcdata.lternet.edu/catalog/metacat?action=read&qformat=sbclter&docid=knb-lter-sbc.17.5&displaymodule=entity&entitytype=dataTable&entityindex=1]|Y|Kelp Forest Community Dynamics monitoring, fish count data from 40 meter transects
+ |[knb-lter-sbc.17.5|http://sbcdata.lternet.edu/catalog/metacat?action=read&qformat=sbclter&docid=knb-lter-sbc.17.5&displaymodule=entity&entitytype=dataTable&entityindex=1]|Y|Kelp Forest Community Dynamics monitoring, fish count data from 40 meter transects
+ |[knb-lter-sbc.19.2|http://sbcdata.lternet.edu/catalog/metacat?action=read&qformat=sbclter&docid=knb-lter-sbc.19.2&displaymodule=entity&entitytype=dataTable&entityindex=1]|Y|Kelp Forest Community Dynamics, monitoring small or cryptic invertebrate and algae counts in 1 meter-square quadrats
+ |[knb-lter-sbc.14.5|http://sbcdata.lternet.edu/catalog/metacat?action=read&qformat=sbclter&docid=knb-lter-sbc.14.5&displaymodule=entity&entitytype=dataTable&entityindex=1]|Y|Time series of giant kelp biomass along the coasts of California and Baja, Mexico
+ |__VCR__|||
+ |[ALM7D8802A|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=ALM7D8802A#variables]|Y|Temporal and spatial distribution of microbial biomass, growth and activity.
+ |[BPH8801A|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=BPH8801A]|Y|Hurricane record for the Virginia Coast Reserve
+ |[HHS8802A|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=HHS8802A]|Y|Plant distribution on Hog Island
+ |[RAB9001A|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=RAB9001A]|Y|Hog and Cobb Island nesting seabird study, part A.
+ |[RAB9001B|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=RAB9001B]|Y|Hog and Cobb Island nesting seabird study, part B.
+ |[RDD6B7501A|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=RDD6B7501A]|Y|Survey of island small mammals - trapping data
+ |[VCR03090|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR03090]|Y|Root biomass on Northern Hog Island
+ |[VCR03092|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR03092]|Y|Aboveground biomass of dune vegetation on the Hog Island chronosequence
+ |[VCR05113|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR05113]|H|Parramore Permanent Plot Resurvey: Tree data
+ |[VCR05115|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR05115]|Y|Parramore Permanent Plot Resurvey: Shrub data
+ |[VCR05117|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR05117]|Y|Parramore Permanent Plot Resurvey: Landcover Class Aggregation data
+ |[VCR05118|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR05118]|Y|Parramore Permanent Plot Resurvey: Subplot data
+ |[VCR05119|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR05119]|Y|Parramore Permanent Plot Resurvey: Clip plot data
+ |[VCR05120|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR05120]|Y|Parramore Permanent Plot Resurvey: Calibration Saltmarsh Plot data
+ |[VCR05122|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR05122]|Y|Parramore Permanent Plot Resurvey: Calibration Saltmarsh Stem data
+ |[VCR05123|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR05123]|Y|Parramore Permanent Plot Resurvey: LAI-Biomass data
+ |[VCR97015|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR97015]|Y|Inundation Experiment Permanent Plot Data : Biomass
+ |[VCR97016|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR97016]|Y|Inundation Experiment Permanent Plot Data : Bulk Density
+ |[VCR97017|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR97017]|Y|Inundation Experiment Permanent Plot Data : Macroorganic Material
+ |[VCR97022|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR97022]|Y|Plant distribution on Hog Island : T1 : Myrica allometry - dia.+wgt.
+ |[VCR97028|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR97028]|Y|Crab Burrows, Soil Nutrients, and Spartina alterniflora : nutrients
+ |[VCR97032|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR97032]|Y|Production data from Brownsville Marsh 1992
+ |[VCR97035|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR97035]|Y|Plant Cover Upper Phillips Creek
+ |[VCR97052|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=VCR97052]|Y|Fertilization Above & Below Ground Biomass and Species Number on Hog Island Dunes
+ |[WO8802A|http://www.vcrlter.virginia.edu/cgi-bin/w3-msql2/data/query/datasets/show_data.html?QDATA_ID=WO8802A]|Y+|Spartina alterniflora leaf measurements, part A
+ |__PISCO__|||
+ |[pisco_cbs.56.17|http://data.piscoweb.org/catalog/metacat?action=read&qformat=piscoweb&docid=pisco_cbs.56.17&displaymodule=entity&entitytype=dataTable&entityindex=4]|Y|Intertidal: Coastal Biodiversity Surveys: Quadrat Surveys
+ |[pisco_cbs.55.22|http://data.piscoweb.org/catalog/metacat?action=read&qformat=piscoweb&docid=pisco_cbs.55.22&displaymodule=entity&entitytype=dataTable&entityindex=4]|Y|Intertidal: Coastal Biodiversity Surveys: Swath Surveys
+ |[pisco_snbs.1.7|http://data.piscoweb.org/catalog/metacat?action=read&qformat=piscoweb&docid=pisco_snbs.1.7&displaymodule=entity&entitytype=dataTable&entityindex=7]|Y|ntertidal: Biodiversity Surveys: OSU: Spatially-nested Biodiversity Surveys
+ |[pisco_recruitment.27.1|http://data.piscoweb.org/catalog/metacat?action=read&qformat=piscoweb&docid=pisco_recruitment.27.1&displaymodule=entity&entitytype=dataTable&entityindex=4]|Y|Intertidal: Recruitment Monitoring: OSU: Recruitment collectors and Rock Clearings
+ |[pisco_recruitment.62.3|http://data.piscoweb.org/catalog/metacat?action=read&qformat=piscoweb&docid=pisco_recruitment.62.3&displaymodule=entity&entitytype=dataTable&entityindex=4]|Y|Intertidal: Recruitment Monitoring: UCSC: Recruitment collectors and Rock Clearings
Line 59 was replaced by lines 110-135
- * The majority of types of GCE Web-accessible datasets are represented above
+ * Y = Yes, include in corpus (+ = complete); H = possibly include, need more information about methods/data
+ * The majority of types of Web-accessible datasets are represented above
+ * Might consider using "derived" data from Worm et al study (Impacts of Biodiversity Loss on Ocean Ecosystem Services, Science, Nov 3, 2006); see [here|http://www.sciencemag.org/cgi/content/full/sci;314/5800/787/DC1] for supporting material containing data and references.
+
+ !! Annotation Tool
+ * A simple tool has been built to record the annotation of data sets during the meeting. The tool can be found [here|http://rupert.msi.ucsb.edu/cgi-bin/oboe.cgi], but will not be operating when the temporary server is sleeping.
+
+ !!Domain Ontology, Thesaurus, and Glossary Examples, Related Work
+ ! Ontologies
+ * [SWEET Ontologies|http://sweet.jpl.nasa.gov/ontology/]
+ * [SPIRE (and older SEEK) ontologies|http://spire.umbc.edu/ont/]
+ * [Plant Ontology|http://www.plantontology.org/]
+ * [Ordnance Survey Ontologies|http://www.ordnancesurvey.co.uk/oswebsite/partnerships/research/research/semantic.html]
+ * [EcoLingua|http://www.springerlink.com/content/f2tgegm8rqf6pqrf/]
+
+ ! Thesauri
+ * [NBII Keyword Thesaurus|http://thesaurus.nbii.gov]
+ * [GEMET Thesaurus|http://www.eionet.europa.eu/gemet]
+ * [The NASA Thesaurus|http://www.sti.nasa.gov/thesfrm1.htm]
+ * [E. V. Komarek Fire Ecology Thesaurus|http://www.talltimbers.org/research/fethesaurus.htm]
+ * [USGS Thesaurus|http://www.usgs.gov/science/about/]
+
+ ! Glossaries
+ * [EEA multilingual environmental glossary|http://glossary.eea.europa.eu/EEAGlossary]
+ * [UCMP Glossary|http://www.ucmp.berkeley.edu/glossary/glossary.html]
+ * [CHM Biodiversity Glossary|http://biodiversity-chm.eea.europa.eu/nyglossary_terms/]
Lines 61-84 were replaced by line 137
-
-
-
- !Domain Ontology, Thesaurus, and Glossary Examples, Related Work
- * Ontologies
- ** [SWEET Ontologies|http://sweet.jpl.nasa.gov/ontology/]
- ** [SPIRE (and older SEEK) ontologies|http://spire.umbc.edu/ont/]
- ** [Plant Ontology|http://www.plantontology.org/]
- ** [Ordnance Survey Ontologies|http://www.ordnancesurvey.co.uk/oswebsite/partnerships/research/research/semantic.html]
- ** [EcoLingua|http://www.springerlink.com/content/f2tgegm8rqf6pqrf/]
-
- * Thesauri
- ** [NBII Keyword Thesaurus|http://thesaurus.nbii.gov]
- ** [GEMET Thesaurus|http://www.eionet.europa.eu/gemet]
- ** [The NASA Thesaurus|http://www.sti.nasa.gov/thesfrm1.htm]
- ** [E. V. Komarek Fire Ecology Thesaurus|http://www.talltimbers.org/research/fethesaurus.htm]
- ** [USGS Thesaurus|http://www.usgs.gov/science/about/]
-
- * Glossaries
- ** [EEA multilingual environmental glossary|http://glossary.eea.europa.eu/EEAGlossary]
- ** [UCMP Glossary|http://www.ucmp.berkeley.edu/glossary/glossary.html]
- ** [CHM Biodiversity Glossary|http://biodiversity-chm.eea.europa.eu/nyglossary_terms/]
-
- !Participants:
+ !!Participants
At line 85 added 1 line.
+ * Serguei Krivov, UV
Removed line 89
- * ...

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This material is based upon work supported by the National Science Foundation under award 0225676. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).

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Arizona State University Napier University University of North Carolina University of Vermont
 
UC Davis Genome Center

Copyright 2004 Partnership for Biodiversity Informatics, University of New Mexico, The Regents of the University of California, and University of Kansas