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| - !!! Sparrow |
| + !!! Sparrow |
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| - Sparrow ontologies, like description-logic ontologies, define concepts, roles, individuals, and properties. |
| + Sparrow, like description logics, represent ontologies using concepts, roles, and individuals. We desribe each of these below. |
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| - !! Basic Concept Definitions |
| + !! Concepts |
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| - Concepts in sparrow are defined using ''sentences.'' For instance, we can introduce a new concept called 'vegetarian' into an ontology using the following sentence. |
| + In sparrow, concepts are defined using ''sentences.'' For instance, we can introduce a new concept called 'Vegetarian' using the following sentence. |
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| - This sentence simply states that the term 'Vegetarian' is a concept. In the above sentence, the term 'concept' is a reserved word. We can give further elaborate concepts using ''concept axioms,'' for example: |
| + This sentence simply states that the 'Vegetarian' is a concept. Note that the term 'concept' is a reserved word in the sparrow language. A concept can be further elaborated using ''concept axioms,'' which are essentially more complex sentences of a restricted form. Consider the following example. |
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| - concept Animal kind_of Organism |
| + concept Animal kind-of Organism |
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| - This sentence states that the term 'Animal' is a sub-concept of the concept 'Organism'. In other words, every animal is an organism. The term 'kind_of' is a reserved word. Both 'Animal' and 'Organism' are asserted as being concepts by this sentence. The sentence is equivalent to the following three sparrow sentences. |
| + This sentence states that 'Animal' is a subconcept of 'Organism'. In other words, every animal is an organism. The term 'kind-of' is a reserved word (sometimes referred to as "is-a"). The sentence is considered an axiom because it is asserting a rule, or relationship, that is assumed to hold between 'Animal' and 'Organism'. Namely, that being an animal implies being an organism. |
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| + Both 'Animal' and 'Organism' are asserted as being concepts by this sentence. The sentence is equivalent to the following three sparrow sentences. |
| + |
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| - concept Animal kind_of Organism. |
| + concept Animal kind-of Organism |
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| - Multiple sentences defining the same concept are combined through conjunction (and). For example, the sentences: |
| + Multiple sentences defining the same concept can be combined through conjunction (and). For example, the sentences: |
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| - concept Organism |
| - concept Animal |
| - concept Plant |
| - concept Animal kind_of Organism |
| - concept Animal kind_of not Plant |
| + concept Animal kind-of Organism |
| + concept Animal kind-of not Plant |
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| - concept Animal kind_of Organism and not Plant |
| + concept Animal kind-of Organism and not Plant |
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| - That is, an animal is an organism but not a plant. The terms 'and' and 'not' are sparrow reserved words. |
| + Here the terms 'and' and 'not' are sparrow reserved words. The sentence states that an animal is an organism but not a plant. For convenience, 'and' can be replaced by the term 'but', for example: |
| + |
| + {{{ |
| + concept Animal kind-of Organism but not Plant |
| + }}} |
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| - CONCEPT animal KIND_OF organism AND NOT plant |
| + CONCEPT animal KIND-OF organism BUT NOT plant |
| + }}} |
| + |
| + Another type of concept axiom that can be expressed in sparrow is equivalence among concepts. For example, consider the following sentence. |
| + |
| + {{{ |
| + concept Human same-as Person |
| + }}} |
| + |
| + This sentence asserts that 'Human' and 'Person' denote the same concept. |
| + |
| + |
| + !! Roles |
| + |
| + A more complex example ... |
| + |
| + {{{ |
| + concept Macromolecule same-as Molecule that contains at-least 100 Atom |
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| - !!! Complex Concept Definitions |
| + |
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| + !! Individuals |
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| + |
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| - A sparrow ontology consists of one or more sparrow sentences. The following two sentences define |
| + A sparrow ontology is made up of a set of sparrow sentences. Typically an ontology would be stored in a single file, however, a file could conceivable store multiple ontologies. An ontology is started with the 'ontology' reserved word. An ontology can import definitions from other ontologies. The following example starts an ontology definition and imports an external ontology. |
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| - sparrow define myOnt uri 'http://seek.ecoinformatics.org/#myOnt' |
| - sparrow import yourOnt uri 'http://seek.ecoinformatic.org/#yourOnt' |
| + ontology myOnt 'http://seek.ecoinformatics.org/ontology1#' |
| + import yourOnt 'http://seek.ecoinformatics.org/ontology2#' |
| + |
| + ... |
| + |
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| + |
| + !!! Sparrow Reserved Wordsf |
| + |
| + ||reserved word||variant |
| + | and | but, that |
