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TOSAPI Signatures
Your trail: EScienceLinkUpOct04 | SDSCWeeklyMeetings | KBISMeetingNotes | TaxonSMSApril04PrototypeNotes | ENMPipelineConferenceCall20Oct2004 | ENMPipelineConferenceCall14Sep2004 | KeplerConferenceCallNotes19Aug2004 | IdentifiersInKepler | AHM_May2006_Taxon | TaxonTaskList

Difference between version 22 and version 4:

Lines 1-2 were replaced by lines 1-2
- !! Disclaimer
- These APIs will change slightly by early Dec 2004 - do not code directly to them now! I will add a link to the code documentation for complete object descriptions at that time.
+ !! Informational APIs (to get parameters for other queries)
+ * AAlgorithmMetaArray __getAlgorithmMetadata__() throws java.rmi.RemoteException
Lines 4-5 were replaced by line 4
- !! Current Query APIs using simple lookup
- * CConcept __getConcept__(String sConceptID, int iHierarchyID, boolean bUseCacheFlag) throws CDBException, CConceptException, SQLException
+ * StringArray __getAlgorithmNames__() throws java.rmi.RemoteException
Line 7 was replaced by line 6
- * CRelatedConcept[] __findRelatedConcepts__(String sConceptID, int[] oHierarchyIDs, String sRelationshipType, int iDistance, boolean bUseCacheFlag) throws SQLException, CDBException, CConceptException, IllegalArgumentException
+ * void __getAlgorithmDetails__(String algorithmName, StringHolder author, StringHolder description) throws java.rmi.RemoteException
Line 9 was replaced by line 8
- * float __measureRelationship__(String sConceptID1, String sConceptID2, int[] oHierarchyIDs, String sRelationshipType, int iDistance, boolean bUseCacheFlag) throws SQLException, CDBException, CConceptException, IllegalArgumentException
+ * CAuthorityArray __getAuthorities__() throws java.rmi.RemoteException
Line 11 was replaced by line 10
- * CNode[] __getTree__(String sConceptID, String sXMLDesc, int iHierarchyID, boolean bUseCacheFlag) throws CDBException, SQLException
+ * StringArray __getAuthorityNames__() throws java.rmi.RemoteException
Lines 13-16 were replaced by line 12
- !! Current Query APIs using Matching
- * CWeightedConcept[] __findConcepts__(CTaxonomicQuery oTaxonQuery, int[] oHierarchyIDs, String sSimilarityAlgorithm, float fSimilarityThreshold, boolean bUseCacheFlag) throws
- CAlgorithmException, CDBException, CConceptException, SQLException, FileNotFoundException,
- IOException
+ * void __getAuthorityDetails__(String authorityName, StringHolder revision, StringHolder description, StringHolder termsOfUse) throws java.rmi.RemoteException
Line 18 was replaced by lines 14-15
- * float __compareConcepts__(String sConceptID1, int iHierarchyID1, String sConceptID2, int iHierarchyID2, String sSimilarityAlgorithm, boolean bUseCacheFlag) throws CConceptException, CDBException, CAlgorithmException, SQLException
+ !! Query APIs using simple lookup
+ * CConcept __getConcept__(String conceptGuid) throws java.rmi.RemoteException
Lines 20-22 were replaced by lines 17-43
- !! This one is going away!
- * float __compareConceptRelationships__(String sConceptID1, int iHierarchyID1, String sConceptID2, int iHierarchyID2, String sRelateAlgorithm,
- boolean bUseCacheFlag) throws Exception
+ * CTaxonName __getName__(String nameGuid) throws java.rmi.RemoteException
+
+ * CSpecimen __getSpecimen__(String specimenGuid) throws java.rmi.RemoteException
+
+ * StringArray __getSynonymousNames__(String conceptGuid) throws java.rmi.RemoteException
+
+ * CRelationshipInfo __findRelatedConcepts__(String conceptGuid, String relationshipType, boolean includeAssertions, boolean useCache) throws java.rmi.RemoteException
+
+ * void __findRelatedConceptGuids__(String conceptGuid, String relationshipType, boolean includeAssertions, boolean useCache, StringHolderArray arrGuids, StringHolderArray arrRelTypes) throws java.rmi.RemoteException
+
+ * void __getBestConcept__(String name, String authorityName, StringHolderArray arrGuids, FloatHolderArray arrScores) throws CTOSException
+
+ * StringArray __getAuthoritativeList__(CAuthority auth, String conceptGuid, String targetRankCode) throws java.rmi.RemoteException
+
+ * CConceptArray __getHigherTaxon__(CTaxonName name, String targetRankCode, CAuthority authority) throws java.rmi.RemoteException
+
+ * StringArray __getHigherTaxonName__(String name, String targetRankCode, String authorityName) throws java.rmi.RemoteException
+
+ !! Query APIs using Algorithm Matching
+ * CWeightedConceptArray __findConcepts__(CConcept taxonQuery, String algorithm, float threshold, boolean useCache) throws java.rmi.RemoteException
+
+ !! Modification APIs (may not be publicly/universally accessible)
+ * String __addConcept__(CConcept concept) throws java.rmi.RemoteException
+
+ * String __addRelationship__(String fromGuid, String toGuid, String relationshipType, CAccordingTo accTo) throws java.rmi.RemoteException
+
+

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This material is based upon work supported by the National Science Foundation under award 0225676. Any opinions, findings and conclusions or recomendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation (NSF).

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Long Term Ecological Research Network, UNM National Center for Ecological Analysis and Synthesis, UCSB Biodiversity Research Center, KU San Diego Supercomputer Center, UCSD
 
Arizona State University Napier University University of North Carolina University of Vermont
 
UC Davis Genome Center

Copyright 2004 Partnership for Biodiversity Informatics, University of New Mexico, The Regents of the University of California, and University of Kansas