| Line 1 was replaced by line 1 |
| - !! Building Blocks |
| + !!! Building Blocks |
| Lines 3-4 were replaced by lines 3-4 |
| - !Taxonomic Object Service (TOS) |
| - __Stabilize__ |
| + !! Taxonomic Object Service (TOS) |
| + ! Stabilize |
| Line 12 was replaced by line 12 |
| - __Improve__ |
| + ! Improve |
| Lines 18-19 were replaced by lines 18-19 |
| - ! Taxonomic Concept Schema (TCS) |
| - * Fix version of TCS for current dev cycle (Trevor, Aimee) |
| + !! Taxonomic Concept Schema (TCS) |
| + * Fix version of TCS for current dev cycle (Trevor, Aimee - DONE, v0.88) |
| Line 23 was replaced by line 23 |
| - ! Update/Maintain documentation |
| + !! Update/Maintain documentation |
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| - !! Overall Goals |
| + !!! Overall Goals |
| At line 29 added 72 lines. |
| + !! Tools: Visualization - Browsing and Editing |
| + ! Summarize |
| + * Put issues on wiki (Bob, Nico, Xianhua – 11/24 - DONE) |
| + ** Nico is preparing a summary document to be reviewed by Bob et al. on Nov. 23 - __delivered on Nov. 24;__ see [SeekTaxonTools] |
| + ** Who are the users of each? |
| + ** Use cases for Tools |
| + ** What kind of editing tools are needed? |
| + *** Should we have separate browsing/editing tools? |
| + *** There should be coordination between the 2 - not different displays for user to view |
| + ** How does current work fit in (TCBE, Martin's viz tool) |
| + ** look at Napier work/proposal and see if/how they can work together (UNC) |
| + |
| + ! Needs as defined Nov 2004 |
| + * Tool for creating concepts/relationships |
| + ** Batch data dump |
| + ** User Guide: Walk the experts through the concept creation steps() |
| + * Tool for viewing concepts/relationships |
| + * Tool for marking up EML datasets with concepts |
| + ** Ecological dataset functionality |
| + ** Specimen dataset functionality |
| + ** Manual markup tool ("weird" taxa, loose relationships to known concepts) |
| + ** Auto markup tool |
| + ** Merge tool |
| + * Peer review interactions |
| + * Revisit Use Cases |
| + * Tool to define mappings from other dbs to TCS (mapForce?) (Trevor) |
| + |
| + !! Integration: TOS with rest of SEEK |
| + ! Mammal Use Case |
| + * Aquire taxonomic data |
| + ** Identify 1-5 taxa to target |
| + *** narrow the field by looking at MaNIS datasets (Thau – Nov 12 - DONE) |
| + *** further narrow of target taxa to around 5 based on available expertise and taxonomic interest (Nico, Town, Mark, Deanna) - __bats it is! (Dec. 04)__ |
| + ** Identify and access mammal taxonomic databases (Jessie, Trevor) |
| + ** Recruit experts to map relationships between concepts (Nico, Town) - __Dr. Kate Jones! (Feb. 05)__ |
| + *** create rough guidelines - example driven (Nico, Trevor, Bob, Jessie) |
| + *** develop examples |
| + ** Work with experts to create taxonomic concepts (Jessie, Robert K) |
| + ** Encode taxonomic concepts in TCS (Jessie, Robert K) |
| + ** Create TCS from mammal concept data (Nico, Jessie) |
| + ** Import TCS into TOS (Aimee, Robert) |
| + * Annotate datasets |
| + ** Identify likely sources of taxonomic information (Thau, Jessie) |
| + ** Test concept dataset generation (name, source) (Jessie, Trevor, Thau) |
| + ** Generate LSIDs for concepts within (Thau) |
| + ** Annotate EML with test concepts (Matt, Thau) |
| + * Build Kepler actors (Robert, Aimee, Thau) |
| + ** Learn Kepler |
| + ** Determine actors to build (or extend existing Web Service actor) |
| + *** identify candidates |
| + *** consult for feasability and usefulness |
| + ** Create example work flows |
| + |
| + ! Longer Term |
| + * Integrate TOS with Ecogrid (Matt, Rod, Susan) |
| + ** Incorporate TOS into current data queries |
| + *** Integrate SMS and Taxon searching |
| + ** Aggregation node vs individual providers, regularly scheduled updates |
| + * Modify taxonomic part of EML (Matt, Jessie) |
| + ** Can use additionalMetadata with no changes to EML tools for experimentation |
| + ** Could use simple name/rank/publication composite key with/without LSID |
| + *** Prerequisites: Name Schema Work above |
| + ** Using only LSID might be best long-term solution |
| + * Integrate dataset annotation with TOS |
| + ** Modify Morpho tool to use TOS for concept matching |
| + ** How do we interface with ecological dataset creators that don't use Morpho? |
| + ** Ecological and Specimen datasets |
| + ** Prerequisites: |
| + *** SMS annotation for smart data discovery |
| + *** EML modification |
| + * Evaluate text extraction from primary literature to produce concepts (Joana) |
| + |
| At line 30 added 6 lines. |
| + * Concept language - Nico, Bob, Jessie (1 month) |
| + * for Ecologists - Trevor, Bob, Nico () |
| + * General SEEK Taxon paper, where the field is going (Beach) (not begun) |
| + * Quarterly Review of Biology (submitted) |
| + * Concepts and GUIDs (Systematics Biology - Nico, Thau, Jessie) (3 months for internal review) |
| + * Technical aspects of concepts and GUIDs (Thau and ??) (not begun) |
