Science Environment for Ecological Knowledge
Ecoinformatics site parent site of Partnership for Biodiversity Informatics site parent site of SEEK - Home
Science Environment for Ecological Knowledge









 

 

 



ENM Pipeline Conference Call 14 Sep 2004

Difference between version 18 and version 2:

Line 2 was replaced by line 2
- Jones, Zhang, Peirera, Higgins, Berkley
+ Jones, Zhang, Pereira, Higgins, Berkley
Line 6 was replaced by line 6
- # Ricardo summary of work
+ * Ricardo summary of work
Line 13 was replaced by line 13
- # OM actors will take layers, a sampling grid, and occurrence data as inputs
+ * OM actors will take layers, a sampling grid, and occurrence data as inputs
At line 15 added 24 lines.
+ *** current image converter needs to be able to create lower resolution images for display
+ ** DIGIR query is currently a single call to DiGIR
+ *** Need to do a DiGIR 'inventory' call to get list of species, then iterate across those species
+ **** But note that EcoGrid does not provide the DiGIR inventory method
+ **** Also note DiGIR results are not yet handled in Kepler
+
+ * Post processing steps are underspecified
+
+ * Action items
+ ** finish up DiGIR integration (Rod)
+ ** Need environmental layers in ecogrid with metadata (Deana? Matt will ask her)
+ *** Ecogrid moves data layer files to nodes as needed by OM
+ ** implement post processing, mostly GIS ops along with ROC threshold (Ricardo will further specify)
+ *** SummaryStats -- pairwise intersections between Grid layers (current vs predicted)
+ ** implement OM (Ricardo)
+ ** GRASS routines need to be redone using JNI to better handle GRASS output (Jianting)
+ *** verify all GIS operations are complete
+ *** Clipping actor needs to gen a covex hull, check to be sure it does
+ *** deal with data transfer issues for GRASS web service
+ ** Distributed computation to apply more significant computational power across iterations (Dan)
+ *** use map actor to refactor pipeline for simplification of iteration cycles
+ *** 5 climate scenarios, 1000 species, 500 garp runs per species
+ *** Make sure data is available on node when OM needs it for a given iteration
+ **** Probably passing file-handles instead of data tokens (GDAL in OM depends on file handles)

Back to ENM Pipeline Conference Call 14 Sep 2004, or to the Page History.