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Difference between
version 35
and
version 34:
| At line 135 added 22 lines. |
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| + !Grid Workflow Case Studies / Use Cases |
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| + * Peter Li: Large data set transfer use case from Graves' disease scenario |
| + ** Graves' disease: autoimmune thyroid disease; lymphocytes attack thyroid gland cells causing hyperthyroidism; symptoms: increates pulse rate, sweating, heat interolerance, goitre, exophthalmose; inherited |
| + ** In silico experiments: microarray data analysis, gene annotation pipeline, design of genotype assays for SNP variations |
| + ** large data set transfer problem: ~9 data sets x 60 mb of GD array data; affyR service integrates data sets, ... |
| + ** demo |
| + |
| + * Tom Oinn |
| + ** service a passes data to service b |
| + ** service b may start before service a finished execution |
| + ** need a comprehensive solution |
| + ** lsid's won't work |
| + ** to get the data out of it, you have to use soap calls, and you get all the data at once, or none |
| + ** the only way is if the lsid points to a stream -- otherwise lsid arch. won't support it |
| + ** Inferno ... Redding e-Science center (?) in the UK ... Inferno e-service |
| + ** take any command line tool, wrap it up in this mechanism, deal with the reference passing, automatically |
| + ** inputs are urls, protocol called styx |
| + ** basically, a naming convention that lets you denote streams |
| + ** [http://www.vitanuova.com/solutions/grid/grid.html] |
| + ** |
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