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SEEK All Hands Meeting 20021113

Difference between version 10 and version 2:

Line 7 was replaced by lines 7-8
- Background Information and Links. Participants
+ *[Background Information and Links|SEEKAllHandsMeeting20021113#Background]
+ *[Participants|SEEKAllHandsMeeting20021113#Participants]
Line 9 was replaced by line 10
- Meeting schedule:
+ !!Meeting schedule:
Lines 11-125 were replaced by lines 12-118
- Wednesday November 13
- evening Arrive Wednesday afternoon/evening at MCI, drive/shuttle to Lawrence (1 hour)
- 7:00 pm Early bird, informal dinner @ Tellers Restaurant, Massachusetts Street and 8th
-
- Thursday November 14
- 7:45 am Coffee and continental breakfast, Spencer Research Library
- 8:00 Welcome Beach; Krishtalka; Research Librarian
- Introductions
- Overview of SEEK vision from a community perspective Michener
- Summary of proposed SEEK activities and architecture Jones
- 10:00 Break
- 10:30 Presentations (12 x 5 minutes each) on relevance of existing projects to SEEK development. Limit 5 slides/ 5 minutes + couple minutes discussion
- The Knowledge Network for Biocomplexity (KNB) Jones
- Xanthoria/ClimDB McCartney
- Ontology-Based Classification Gauch
- Storage Resource Broker: A Brief Introduction Rajasekar
- Semantic Mediation and Scientific Workflows Ludaescher
- Integrating modelling architecture: ontologies for cross-scale, cross-paradigm natural system modelling Villa
- The Prometheus approach to multiple classifications Kennedy
- Spatiotemporal Extrapolation of Ecological Knowledge Pennington
- LTER Informatics Activities Brunt
- The VegBank taxonomic data model Peet
- Access to Distributed Collections Vieglais
- Massive ecological data analysis and visualization Stockwell
- Modeling Complex Biodiversity Phenomena Using Informatics Tools Peterson
- 12:20 Meeting Structure and Objectives Michener
- 12:30 Lunch in building, 20-minute tour of natural history library
- 2:00 Breakout groups (2.5 hours meeting, 1/2 hour break at 3:30 pm, 10 minute report, 20 minute discussion)
- EcoGrid
- Identify existing data network efforts to consider for interoperation
- Identify actual target networks for this project
- Candidate functionality/features with milestones/timelines
- Identify other relevant grid activities
- Discussion of architectural approaches
- User interfaces
- Desired roles/participation
- Identify possible people for membership/participation
- How to best leverage efforts in community?
- Personnel & hiring
- Rajasekar
- Biodiversity and Ecological Analysis and Modeling WG
- End user groups, driver users
- Prototype hi-visibility questions; building blocks
- biodiversity and ecology dynamics
- How to best link with BEAM, and other 2 WGs
- Data discovery/availability
- Identify information & data needs
- Identify leveraging groups (eg LIDET, TRAGNET)
- Identify possible people for membership/participation
- Personnel & hiring
- Michener
- 6:00 Reception and dinner in building
- Friday November 15
- 7:45 am Coffee and continental breakfast, Spencer Research Library
- 8:30 Breakout groups (2.5 hours meeting, 1/2 hour break at 10:00 am, 10 minute report, 20 minute discussion)
- Semantic Mediation System
- Identify existing ontologies/terminologies
- How used today by community, availability (book, CD?)
- High-level scenarios/use cases for semantic mediation
- Candidate functionality/features with milestones/timelines
- What role does SM play in dynamic integration and discovery of data?
- (when integrated view not put together ahead of time)
- What infrastructure needed to assist KR/Ontology WG?
- Identify possible people for membership/participation
- How to best leverage efforts in community?
- Personnel & hiring
- Ludaescher
- Taxonomy WG
- Identify existing projects & models for concept-based taxon
- Identify requirements for classification data architecture
- Consider alternatives to concept-based taxon?
- Do concept-based taxonomies actually solve a problem?
- How can classification architecture contribute to A&M & Ecogrid
- Shoud we accommodate P-code & alternate naming systems, and if so, how?
- End-user tools to manipulate classification trees
- Discuss overlap with SM
- How to populate such an ambitious DB
- Identify possible people for membership/participation
- How to best leverage efforts in community?
- Personnel & hiring
- Beach
- 12:30 Lunch in building
- 2:00 - 5:30 Breakout groups (2 hours meeting, 1/2 hour break at 3:30 pm, 10 minute report, 20 minute discussion)
- Analysis and Modeling System
- Identify existing systems that are relevant (e.g., Ptolemy, Pipeline Pilot)
- High-level scenarios/use cases for semantic mediation
- Candidate functionality/features with milestones/timelines
- What infrastructure is required for DAM WG
- User interfaces
- Identify possible people for membership/participation
- How to best leverage efforts in community?
- Personnel & hiring
- Jones
- Knowledge Representation WG
- What will useful ontologies be for A&M and SEEK in general
- Identify existing controlled vocabularies that can be leveraged
- To what extent can ontology generation be automated?
- Level of formalism and expressiveness needed for SM
- End-user tools to develop & modify ontologies
- End-user tools to expose ontologies to domain scientist
- Tools/metrics for relevance
- Prioritize products and milestones (deliver ontology to SM)
- Identify possible people for membership/participation
- How to best leverage efforts in community?
- Personnel & hiring
- Schildhauer
- 6:00 Group dinner at local microbrewery
- Saturday November 16
- 7:45 am Coffee and continental breakfast, Spencer Research Library
- 8:30 Discussion of overall SEEK vision/plan; unresolved issues; collaboration techniques and tools; exposing SEEK to broader community
- 11:30 Meeting adjourns
- 12:30 Lunch on your own, or depart Lawrence after 12:30. Need to leave Lawrence 2 hours before flight. United, USAir, AmerWest, Southwest (MCI)
-
-
- [http://seek.ecoinformatics.org/meetings/all-hands-20021113/index.html]
+ |__Wednesday November 13__||
+ |evening |Arrive Wednesday afternoon/evening at MCI, drive/shuttle to Lawrence (1 hour)|
+ |7:00 pm |Early bird, informal dinner @ Tellers Restaurant, Massachusetts Street and 8th|
+ |__Thursday November 14__||
+ |7:45 am |Coffee and continental breakfast, Spencer Research Library |
+ |8:00 |Welcome |Beach; Krishtalka; Research Librarian
+ | |Introductions |
+ | |Overview of SEEK vision from a community perspective |Michener
+ | |Summary of proposed SEEK activities and architecture |Jones
+ |10:00 |Break |
+ |10:30 |Presentations (12 x 5 minutes each) on relevance of existing projects to SEEK development. Limit 5 slides/ 5 minutes + couple minutes discussion |
+ | |The Knowledge Network for Biocomplexity (KNB) |Jones
+ | |Xanthoria/ClimDB |McCartney
+ | |Ontology-Based Classification |Gauch
+ | |Storage Resource Broker: A Brief Introduction |Rajasekar
+ | |Semantic Mediation and Scientific Workflows |Ludaescher
+ | |Integrating modelling architecture: ontologies for cross-scale, cross-paradigm natural system modelling |Villa
+ | |The Prometheus approach to multiple classifications |Kennedy
+ | |Spatiotemporal Extrapolation of Ecological Knowledge |Pennington
+ | |LTER Informatics Activities |Brunt
+ | |The VegBank taxonomic data model |Peet
+ | |Access to Distributed Collections |Vieglais
+ | |Massive ecological data analysis and visualization |Stockwell
+ | |Modeling Complex Biodiversity Phenomena Using Informatics Tools |Peterson
+ |12:20 |Meeting Structure and Objectives |Michener
+ |12:30 |Lunch in building, 20-minute tour of natural history library |
+ |2:00 |Breakout groups (2.5 hours meeting, 1/2 hour break at 3:30 pm, 10 minute report, 20 minute discussion) |
+ | |EcoGrid\\ -Identify existing data network efforts to consider for interoperation\\ -Identify actual target networks for this project\\ -Candidate functionality/features with milestones/timelines\\ -Identify other relevant grid activities\\-Discussion of architectural approaches\\-User interfaces\\-Desired roles/participation\\-Identify possible people for membership/participation\\-How to best leverage efforts in community?\\-Personnel & hiring|Rajasekar
+ | |Biodiversity and Ecological Analysis and Modeling WG \\-End user groups, driver users \\-Prototype hi-visibility questions; building blocks biodiversity and ecology dynamics \\-How to best link with BEAM, and other 2 WGs \\-Data discovery/availability \\-Identify information & data needs \\-Identify leveraging groups (eg LIDET, TRAGNET) \\-Identify possible people for membership/participation \\-Personnel & hiring| Michener
+ |6:00 |Reception and dinner in building |
+ |__Friday November 15__||
+ |7:45 am |Coffee and continental breakfast, Spencer Research Library |
+ |8:30 |Breakout groups (2.5 hours meeting, 1/2 hour break at 10:00 am, 10 minute report, 20 minute discussion) |
+ | |Semantic Mediation System \\-Identify existing ontologies/terminologies\\---How used today by community, availability (book, CD?) \\-High-level scenarios/use cases for semantic mediation \\-Candidate functionality/features with milestones/timelines \\-What role does SM play in dynamic integration and discovery of data? (when integrated view not put together ahead of time) \\-What infrastructure needed to assist KR/Ontology WG? \\-Identify possible people for membership/participation \\-How to best leverage efforts in community? \\-Personnel & hiring| Ludaescher
+ | |Taxonomy WG \\-Identify existing projects & models for concept-based taxon \\-Identify requirements for classification data architecture \\-Consider alternatives to concept-based taxon? \\---Do concept-based taxonomies actually solve a problem? \\-How can classification architecture contribute to A&M & Ecogrid \\-Shoud we accommodate P-code & alternate naming systems, and if so, how? \\-End-user tools to manipulate classification trees \\-Discuss overlap with SM \\-How to populate such an ambitious DB \\-Identify possible people for membership/participation \\-How to best leverage efforts in community? \\-Personnel & hiring| Beach
+ |12:30 |Lunch in building |
+ |2:00 - 5:30 |Breakout groups (2 hours meeting, 1/2 hour break at 3:30 pm, 10 minute report, 20 minute discussion) |
+ | |Analysis and Modeling System \\-Identify existing systems that are relevant (e.g., Ptolemy, Pipeline Pilot) \\-High-level scenarios/use cases for semantic mediation \\-Candidate functionality/features with milestones/timelines \\-What infrastructure is required for DAM WG \\-User interfaces \\-Identify possible people for membership/participation \\-How to best leverage efforts in community? \\-Personnel & hiring| Jones
+ | |Knowledge Representation WG \\-What will useful ontologies be for A&M and SEEK in general \\-Identify existing controlled vocabularies that can be leveraged \\-To what extent can ontology generation be automated? \\-Level of formalism and expressiveness needed for SM \\-End-user tools to develop & modify ontologies \\-End-user tools to expose ontologies to domain scientist \\-Tools/metrics for relevance \\-Prioritize products and milestones (deliver ontology to SM) \\-Identify possible people for membership/participation \\-How to best leverage efforts in community? \\-Personnel & hiring| Schildhauer
+ |6:00 |Group dinner at local microbrewery |
+ |__Saturday November 16__||
+ |7:45 am |Coffee and continental breakfast, Spencer Research Library |
+ |8:30 |Discussion of overall SEEK vision/plan; unresolved issues; collaboration techniques and tools; exposing SEEK to broader community |
+ |11:30 |Meeting adjourns |
+ |12:30 |Lunch on your own, or depart Lawrence after 12:30. Need to leave Lawrence 2 hours before flight. United, USAir, AmerWest, Southwest (MCI) |
+
+ !!Participants
+ |James Beach |KUNHM
+ |Chad Berkley |NCEAS
+ |Matthew Brooke |NCEAS
+ |James Brunt |UNM
+ |Scott Downie |KUNHM
+ |Susan Gauch |KU EECS
+ |John Harris |NCEAS
+ |Dan Higgins |NCEAS
+ |Chris Jones |UCSB
+ |Matt Jones |NCEAS
+ |Jesse Kennedy Napier Univ.
+ |Meg Kumin |KUNHM
+ |Bertram Ludaescher |SDSC
+ |Peter McCartney |Arizona
+ |William Michener |UNM
+ |Tim Noble |KUNHM
+ |Robert Peet |UNC
+ |Deanna Pennington |UNM
+ |Town Peterson |KUNHM
+ |Arcot Rajaseka |SDSC
+ |Mark Schildhauer |NCEAS
+ |Aimee Stewart |KUNHM
+ |David Stockwell |SDSC
+ |Jing Tao |NCEAS
+ |Paul Tooby |SDSC
+ |Kristin Vanderbilt |UNM
+ |Dave Vieglais |KUNHM
+ |Ferdinando Villa |Univ. of Vermont
+ |Greg Vorontsov |KUNHM
+ |Robert Waide |UNM
+ |Rich Williams |NCEAS
+
+ !!Background
+ !General
+ *[SEEKProjectProposal]
+ !Scientific Workflow, Analysis, Computational Grids
+ *[Monarch|http://knb.ecoinformatics.org/software/monarch/]
+ *[Ptolemy|http://ptolemy.eecs.berkeley.edu/ptolemyII/]
+ *[Pipeline Pilot|http://www.scitegic.com/]
+ *[Khoros|http://www.khoros.com/]
+ *[Globus|http://www.globus.org/]
+ !Semantic Mediation
+ *[Knowledge-Based Integration of Neuroscience Data (KIND)|http://www.npaci.edu/DICE/Neuro/]
+ *[DAML+OIL|http://www.daml.org/2001/03/daml+oil-index.html]
+ *[W3C Web Ontology / OWL|http://www.w3.org/2001/sw/WebOnt/]
+ *[W3C Semantic Web|http://www.w3.org/2001/sw/]
+ !Data Networks
+ *[Knowledge Network for Biocomplexity|http://knb.ecoinformatics.org/]
+ *[Species Analyst|http://www.speciesanalyst.net/zportal/tsasimple.asp]
+ *[DGIR|http://digir.sourceforge.net/]
+ *[Storage Resource Broker|http://www.npaci.edu/DICE/SRB/index.html]
+ *[NEES Grid|http://www.neesgrid.org/]
+ *[Xanthoria|http://ces.asu.edu/bdi/Subjects/Xanthoria/]
+ !Taxonomy and Nomenclature
+ *[Prometheus|http://www.dcs.napier.ac.uk/%7Eprometheus/prometheus_2/prometheusII.html]
+ *[VegBank|http://www.vegbank.org/]
+ *[FGDC Biological Nomenclature and Taxonomy Data Standard|http://www.fgdc.gov/standards/status/sub5_8.html]
+ *[Biodiversity Information Organization using Taxonomy|http://www.ittc.ku.edu/BIOT/]
+ !Knowledge Representation
+ *[CERES/NBII Thesaurus Partnership Project|http://ceres.ca.gov/thesaurus/]

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