| Line 3 was replaced by lines 3-26 |
| - Collecting individual reports, will summarize on 15 June |
| + * Taxon group |
| + ** Question has arisen about how linking is modeled in the Taxonomic Exchange Standard |
| + ** Reworking protype implementation fo name service |
| + ** Thau creating user authentication module (need to discuss with Tekell and EcoGrid ASAP) |
| + ** Peer review module being developed |
| + |
| + * Kepler group |
| + ** UI design discussions ramping up |
| + ** Presenting Kepler and SMS stuff at SSDBM in Greece (Berkley/Bowers) |
| + ** New nightly build/test system in development |
| + |
| + * EOT group |
| + ** New website authentication working, just about ready to deploy |
| + ** Organizing training workshops for Fall |
| + |
| + * SMS/KR group |
| + ** New Java API being developed for accessing Sparrow from Kepler |
| + ** Working on Growl UI and capabilities |
| + ** Working on ontology for biodiversity indices |
| + ** Working on paper regarding the ant data prototype |
| + |
| + * EcoGrid group |
| + ** New resultset implemented for Metacat, DiGIR, SRB |
| + ** Working on data query design and interfaces |
| At line 4 added 3 lines. |
| + * BEAM group |
| + ** Putting data in SRB for later access through EcoGrid |
| + |
| At line 19 added 187 lines. |
| + !! Xianhua Liu |
| + |
| + Completed Tasks/ Bugs Fixed: |
| + * Finished design of Auto-Manager: auto-email, auto-assignment and auto-decision |
| + * Implemented auto-email function |
| + |
| + Current Work and Bugs: |
| + * developing Auto-Manager for Concept Review System to automatically complete some system administration tasks, such as sending emails,assigning proposals to peer-viewers. |
| + |
| + Significant Issues |
| + * None |
| + |
| + !! Sergui Krivov |
| + |
| + Completed tasks/bugs fixed |
| + * developed toolbox pane (no icons yet) and enabled raw visual editing of simple owl constructs |
| + * wrote a small section of growl paper |
| + |
| + Current Work and Bug |
| + * functions for editing relations and links |
| + ** owl-dl compliance resolution for graphic primitives |
| + * enable node property editing |
| + * one more section for growl paper |
| + |
| + Significant issues |
| + * Should we support owl-full? All who responded seems favor support for owl-dl only |
| + |
| + !! Rich WIlliams |
| + |
| + Completed tasks/bugs fixed |
| + * None |
| + |
| + Current Work and Bugs |
| + * Developing an ontology for biodiversity indices, extending existing ontologies to accommodate this, and adding instances for the biodiversity indices and related concepts. This includes a general model for properties computed in terms of other properties. |
| + * Review/comment on paper that Shawn is lead author on, about the inter-ant parasitism semantic mediation prototype. |
| + * GrOWL editor: updating of the OWL model when the user edits the displayed graph |
| + |
| + 3) Significant issues |
| + * I looked into existing work on the semantics of mathematics, potentially for use when defining quantities in terms of other measured quantities. A useful initiative is www.openmath.org, an emerging standard for representing the semantics of mathematical objects. |
| + |
| + !! Jing Tao |
| + Completed Tasks/ Bugs Fixed: |
| + * Finished the collaboration and class diagram draft design for bug 1584 and 1586 |
| + * Installed and evaluated both windows and linux SAS as sql engine |
| + * Resinstalled and tested Metacat ecogrid server in my local machine after Rod changed the code according to the change of resultset |
| + |
| + Current Work and Bugs: |
| + * Continue to find a good sql engine for data query |
| + * Probably start to code after finding a good sql engine |
| + * Fix some bugs in ecogrid client after the resultset change |
| + |
| + Significant Issues |
| + * None |
| + |
| + !! Aimee Stewart |
| + Completed tasks/bugs fixed |
| + * Bug 1602 - Moved the Taxonomic Object Service SOAP service to http://seek.ittc.ku.edu:9080/TaxObjServ . The WSDL is available from the link there (http://seek.ittc.ku.edu:9080/TaxObjServ/services/TaxonomicObjectService?wsdl). |
| + |
| + Current Work and Bugs |
| + * Working on Bug 1576 - Implement EnterProviderData. This includes modifying the architecture somewhat to separate database modification methods from database query methods into separate classes. Also adding a database connection class which will be used by both DB classes. |
| + * Described (in an email to Seek-Taxon) the difficulties we are encountering with the assumption that a GUID-bearing Taxonomic Concept is defined by the current Taxon Exchange Schema. |
| + |
| + Significant issues |
| + * Taxon Exchange Schema and GUIDs described in seek-taxon email. This may warrant a Seek-Taxon teleconference, preferably by polycom. |
| + |
| + !! Chad Berkley |
| + Completed tasks/bugs fixed |
| + * Worked on the Kepler poster for SSDBM |
| + * Worked on nightly build systems for kepler (bug 1588) |
| + * Began preperation to go to SSDBM |
| + |
| + Current Work and Bugs |
| + * Hopefully get a nightly build system working |
| + * Leave for Greece |
| + |
| + Significant issues |
| + * none |
| + |
| + !! Nico Franz |
| + |
| + Completed Tasks/ Bugs Fixed: |
| + * None, really. |
| + |
| + Current Work and Bugs: |
| + * Since SEEK Edinburgh, has been writing on a substantial manuscript (with R. Peet as co-author) for the journal Taxon, which deals with concepts and relationships among them. |
| + * The manuscript is about half-way completed; will take another 2-4 weeks to be ready for internal review. |
| + * This work is seen as a precursor to the GUID development, i.e. it's trying to answer the question when/what (something) should get a GUID. |
| + |
| + Significant Issues |
| + * There's been a bit of a quiet in SEEK Taxon after the Edinburgh meetings, but apparently that just ended today, with KU sending out an update/request. |
| + * As the TDWG New Zealand planning is moving ahead, would like to make sure that the concept/relation paper is part of our SEEK Taxon presentation package there. |
| + |
| + !! Deana Pennington |
| + Completed tasks/bugs fixed |
| + * completed specs for IPCC climate data processing as kepler design workflow and accompanying document |
| + * completed specs for sampling actor |
| + * sent notes on Kepler (user feedback) to Rod |
| + * sent GARP output schema to Shawn |
| + |
| + Current Work and Bugs |
| + * planning for new BEAM working group on diversity/productivity |
| + * getting all relevant data for ecological niche modeling project into the SRB |
| + * thinking about user interface design and testing approaches |
| + |
| + Significant issues |
| + * will have to create EML for all of the IPCC data |
| + * need a decision on the useability engineer slot (LOTS of discussion on the lists about the UI & testing) |
| + |
| + !! Samantha Romanello |
| + |
| + Completed tasks and Bugs fixed |
| + * Finalized agenda for upcoming Data Management Tools Workshop |
| + * Finalized GIS agenda for RCN training |
| + |
| + Current Work and Bugs |
| + * Website |
| + ** Working on copy for education section of website; attaching links to presentations of former and current trainings. |
| + * Trainings |
| + ** Need to finalize ecoinformatics agenda for RCN training October 18- 30: |
| + ** Composing email for Monthly SEEK Seminar |
| + |
| + * Conferences and Events |
| + ** In contact with Sandy re moprho tutorial for upcoming ESA August 1 - 7: Workshop; Evening Session |
| + ** Working on poster presentation for ESA |
| + |
| + Significant issues |
| + * Finalize participant and trainer numbers for September KNB Data Management Tools training -- conference call scheduled for June 22. |
| + * Finalize ecoinformatics agenda and logistics for RCN training October 18- 30 |
| + |
| + !! Jenny Wang |
| + |
| + Completed Tasks/ Bugs Fixed: |
| + * Analyzed our schema matching tool user interface design |
| + * Fixed one of the bugs for improving its UI: the windows for 2 schema trees were changed to be individually scrollable in order to be able to visually handle the mappings between very large schemas |
| + |
| + Current Work and Bugs: |
| + * Work on 2 paper drafts |
| + * Fix more bugs of the tool: |
| + ** make details of nodes accessible from the GUI, |
| + ** look for solutions for the conflicted requirements on java version from running multiple threads on windows and the XQuery engine with Kepler. |
| + |
| + Significant Issues |
| + * The second bug is related to making easier connection of our tool with Kepler. |
| + |
| + !! Dave Thau |
| + |
| + Completed tasks/bugs fixed |
| + * Got local version of the taxon server set up in my IDE and running on my home machine. |
| + |
| + Current Work and Bugs |
| + * Working on bug #1597 - the intial user management for the taxon server. Wrote initial tests and some of the code for logging in / logging out and editing user information. Probably will finish this part by Wednesday. |
| + * Working on paper with Shawn Bowers for the Semantic Web and Databases conference. |
| + |
| + Significant issues |
| + * None. |
| + |
| + !! Shawn Bowers |
| + Completed tasks/bugs fixed |
| + * Worked mainly on Bug 1592 "describe Sparrow toolkit interface". In particular, defined a preliminary draft of a Java API for accessing ontological information via Sparrow to support Bug 1546 "dynamic data and actor views using ontologies". I also defined a simple extension to the API (set of derived classes) for Bug 1546, which would take a single concept from an ontology and return a tree-structure representing the appropriate Kepler tree-view for browsing (that is, the result is a data structure that could be used to populate a tree-view, however that would work). Still need to add to the API to fully support bug 1546, since it requires access to information about actors.I'll "release" a stable version of the APIs soon, as Javadocs and UML diagrams. Want to prototype it first. |
| + * Worked on a paper with Dave Thau and Rich Williams to describe the Ant Parasitism SMS prototype. It is due on the 21st. |
| + |
| + Current Work and Bugs |
| + * Need to start working on implementing the API, which means writing the java code and connecting it to the Sparrow code (this work is situated in bug 1592 and 1546). |
| + * Extend API (see 1 above). |
| + * Need to finish writing the paper |
| + * Need to prepare slides for SSDBM paper -- I leave Friday. |
| + |
| + Significant issues |
| + * none |
| + |
| + !! Robert Gales |
| + |
| + Completed Tasks/ Bugs Fixed: |
| + * Split the taxonomic object service into two interfaces, ITOSQueryable for handling queries to the Taxon cache and ITOSModifiable for adding information to the Taxon cache |
| + * Created a facade object CTOSFacade that implements both interfaces and exposes the taxonomic object service through SOAP. |
| + * Moved the previous CMainTOS to CTOSQueryEngine implementing the ITOSQueryable interface and created the stub class CTOSModEngine implementing the ITOSModifiable interface. |
| + * Implemented the CDetailedName class for handling the complex atomized names |
| + * Moved all classes that are parts of a concept from the tree package to the concept package. |
| + |
| + Current Work and Bugs |
| + * Bug 1577 - Implement AddRelationship |
| + * Bug 1603 - Implement AddConcept |
| + * Bug 1604 - Convert ITIS database dump to TES |
| + |
| + Significant Issues: |
| + * None |
| + |
