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This is version 7.
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Currently collecting reports, will summarize tomorrow.
Completed tasks/bugs fixed
Current Work and Bugs
- GrOWL editor: worked on building an OWLOntology model from the OntoBrowser graph to allow saving to RDF/OWL.
- Various improvements to eml2rdf in response to feedback from Manu Juyal. Output now correctly imports the underlying ontology and is re-formatted to be vastly more readable.
Significant issues
Completed Tasks/ Bugs Fixed:
- Tested and revised auto-email function
- Designed dynamic PDF generation of revision proposals
Current Work and Bugs:
- developing dynamic PDF function
Significant Issues
Completed Tasks/ Bugs Fixed:
- Completed initial prototype (Proof of concept)
- Has both Novice and Advanced tab
- This gives us a starting place for a discussion on a full featured version
- Notiable Features (Advanced Pane):
- Drop and Drop (D&D) from table field to table field to create "joins"
- D&D from table field to lower pane for expressing the "where" clause
Current Work and Bugs:
- Start on Bug 1595 - Create Advance Query Builder UI
- Continue to refine the prototype
- Attending the Globus/Grid Conference in Madison 6/30-7/1
Significant Issues
Completed Tasks/ Bugs Fixed:
Current Work and Bugs:
- Bug 1606 - Update Kepler to work with version 4.0 of Ptolemy
- Managed to get all of the current Kepler 3.02 code to compile with Ptolemy Beta 4.0. There are still some questions regarding whether the code actually executes properly and time was spent investigating that issue.
- Bug 1342 - R Actor - Continued work on more complex R actor. Began ivestigating the reading of data tables using R
- Starting building a ReScaling actor from from existing Plolemny actors as an example
Significant Issues
Completed tasks/bugs fixed
- Worked more on Bug 1592. Began implementing part of the draft API. Probably be done soon.
- Finished paper on ant parasitism, submitted to SWDB04.
- Attended and presented at SSDBM04.
Current Work and Bugs
- Finish up API for Bug 1592.
Significant issues
Completed Tasks/ Bugs Fixed:
Current Work and Bugs:
- Evaluating sql engines.
- Working on the code for data query engine
- Working on access issues in ecogrid metacat.
Significant Issues
Completed tasks/bugs fixed
- None
- Many minor solutions for editing, and also deleting the graphic constructs, but none global task was accomplished
Current Work and Bugs
- Continue working on enabling editing of major owl constructs.
- Plan to draw (27) icons for toolbox.
- Plan to make tabbed pane to accommodate global properties (???)
Significant issues
- How to edit global properties of ontologies in growl? What to use-popup dialog or tabbed panel?
Completed Tasks/ Bugs Fixed:
- Redesigned the taxon cache database
- Modified all DB relevant code to incorporate the redesign
- Moved all DB related code out of concept classes to prevent any future database changes from affecting the higher layers of the architecture
Current Work and Bugs:
- Bug 1603: Implement addConcept
- Adding name, detailed name, according to, detailed according to, publication, detailed publication and
concept records have been implemented and tested
- Currently implementing adding specimen and character circumscription
- Bug 1577: Implement addRelationship
Significant Issues
Completed Tasks/ Bugs Fixed:
- fixed the 3rd bug mentioned in the last week report: input domain thesauri from user specified text files instead of builtin ones
Current Work and Bugs:
- Work on 2 paper drafts
- Fix more bugs of the tool:
- make details of nodes accessible from the GUI,
- correctly handle union types of matches in the GUI
- Implement abstract schemas and abstract schema morphisms to make the tool more general.
Significant Issues:
- The implementation of abstract schemas and schema morphisms will help the tool handle constraints to some extent.
Completed tasks/bugs fixed
Current Work and Bugs
- working on parser for Taxonomic Exchange Schema as part of enterProviderData (Bug 1576)
Significant issues
Completed Tasks/ Bugs Fixed:
- Launched new web site (in PROD)
Current Work and Bugs:
- Converting old wiki content
- Clean up, minor enhancements to login module and web app
- Make org list dynamic in login form
Significant Issues
- Problem with Tomcat 5 installation/configuration in PROD (unable to load new WARs)
Completed Tasks/ Bugs Fixed:
- June 7 - June 12: Developed a Perl script, data_uploads.pl, which gets a list of Niche Modeling image files, extract and process metadata for each file from Niche Modeling metadata directory and then upload image files and their metadata into SRB system using SRB's S-commands. The Niche Modeling data was successfully uploaded into SRB with the Perl script. I will work with David Stockwell to integrate Ecogrid grid APIs for data retrieving and metadata querying.
- June 14 - June 19: vacation
- June 21 - June 26: vacation
You can see the status reports for other time periods as well.
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