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KR Meeting July 06

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- !!! KR/SMS working meeting
- July/Aug 2006
-
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- Where: San Antonio, Texas\\
- Hotel: [La Mansion del Rio Hotel|http://www.lamansion.com/index.php]\\
- When: Jan. 23-26, 2006\\
- Reimbursements: [http://lternet-183.lternet.edu/doc_archive/forms/]
+ Where: Room 201 on the second floor of NCEAS, Santa Barbara, California (805-892-2500)\\
+ Hotel: [Marina Beach Motel|http://www.marinabeachmotel.com/index2.htm]\\
+ When: July 31- Aug. 2, 2006\\
+ Reimbursements: [http://lternet-183.lternet.edu/doc_archive/forms/], forms will be given out on the first day.
+
+ The meeting will begin promptly at 8:00 am in the 2nd floor conference room at NCEAS in the Balboa Building, 735 State Street.
+ From the airport, you may book SuperRide Airport Shuttle (805-683-9636) or take a cab. A cab is $20-$25 one way (I think). If you have any problems, call Josh on 805-452-7017.
+
+ !!! Schedule
+
+ !! Sunday, July 30th
+ * Arrivals
+
+ !! Monday, July 31st
+ * 7:45 am Coffee
+ * 8:00 am Commence meeting
+ * 10:00 am Break
+ * 12:00 Lunch
+ * 3:00 pm Break
+ * 5:00 pm Finish for day
+
+ !! Tuesday, August 1st
+ * 7:45 am Coffee
+ * 8:00 am Start day
+ * 10:00 am Break
+ * 12:00 Lunch
+ * 3:00 pm Break
+ * 5:00 pm Finish for day
+
+ !! Wednesday, August 2nd
+ * 7:45 am Coffee
+ * 8:00 am Start day
+ * 10:00 am Break
+ * 12:00 End meeting
+ * Departures
+
+ !!! Agenda
+ ! Priority levels: (''1'') High, (''2'') Medium, (''3'') Low
+
+ !! Wednesday TODO:
+ * Discuss annotation GUI
+ ** Kepler or Morpho?
+ ** Should we move forward creating Kepler actor for "sensible" summarisation without annotation GUI
+
+ !! OBOE (''1'')
+ * Finalize structure so can begin publication, process, and extension processes [PRETTY MUCH DONE]
+ ** TREE proposal
+ ** URL
+ ** OBOE guide
+ * Focus will be directed mainly at the Measurement Standard/Units region of the ontology [DONE]
+ ** We need to come to a concensus about how we are going to represent units for quantitative and qualitative/continuous and discrete unit types [DONE]
+ * Add copyright/licence (GPL)/restrictions in to OWL ontologies metadata field; enter version IDs.
+ ** Licence file goes in folder -- get from Morpho
+ ** Copy right statement in OWL file -- see Morpho documents (GPL)
+ ** CVS IDs
+
+ __Action items:__\\
+ Steps: 1. Implement changes in OWL; 2. Upload to URL; 3. Work on illustraive examples; 4. Draft guide; 5. Submit TREE porposal; 6. Decide name for ontology; \\
+ By who: Josh, with help from Shawn\\
+ By when: End of August\\
+
+ !! Extension ontologies (''1'')
+ * Produce a draft convention for engineering extension ontologies
+ ** Extension points: Entity, Characteristic, Measurement Standard, and Context
+ ** Evaluation process
+ * Producing foundational controlled vocabularies
+ ** Methods (e.g., text parsing)
+ ** Browsing (e.g., online thesaurus-type browsing)
+ * Evaluation and filling-in of foundational controlled vocabulary
+ ** E.g., public wikipedia-like interface for ecologists to add/edit/debate ecological concepts and relationships
+ __Action items:__\\
+ Steps: 1. Produce SEEK set of high-level extesion ontologies, primarily for illustrative purposes; 2. Write set of instructions/rules for creating extension ontologies for other groups/initiatives.\\
+ By who: Josh\\
+ By when: End of September\\
+
+ !! Representing annotations (''1'')
+ * Discussion of ways to store OBOE data annotations
+ ** EML extension/new module
+ ** Short term versus long term considerations
+ __Action items:__\\
+ Steps: 1. Decide on syntax/language for annotation; 2. Develop GUI for annotation; 3. Decide where/how annotation syntax will be saved\\
+ By who: Shawn, with help from Josh\\
+ By when: End of September\\
+
+ !! Versioning and backward compatibility issues (''2'')
+ * E.g., OBOE's constant structural changes have made it hard to create extension ontologies
+ __Action items:__\\
+ Steps: ...\\
+ By who: ...\\
+ By when: ...\\
+
+ !! Data summarization (''2'')
+ * Demostration of summarization capabilities enabled by OBOE
+ __Action items:__\\
+ Steps: 1. Create basic summarization actor in kepler that reads annotation and ...\\
+ By who: Josh\\
+ By when: End of September\\
+
+ !! Operation over observations and measurements (''2'')
+ * Demonstration of compatibility and conversion using OBOE
+ * Flush out all function necessary for simple data merge
+ __Action items:__\\
+ Steps: 1. \\
+ By who: ...\\
+ By when: ...\\
+
+ !! ENM issues (''3'')
+ * Examine document provided by Deana
+ *[ENM Document | http://rupert.msi.ucsb.edu/~madin/ENMKRneeds.doc] (DOC)
+ __Action items:__\\
+ Steps: ...\\
+ By who: ...\\
+ By when: ...\\
+
+ !!! Links and Ontologies
+
+ *[SEEK WebPage | http://seek.ecoinformatics.org/]
+ *[NCEAS WebPage | http://www.nceas.ucsb.edu/]
+
+ !OBOE
+
+ *[OBOE and other ontologies in cvs | http://cvs.ecoinformatics.org/cvs/cvsweb.cgi/seek/projects/kr-sms/kr/ontologies/OBOE/] (OWL format)
+ *[Current incarnation | http://rupert.msi.ucsb.edu/~madin/OBOE_master_3.pdf] (PDF)
+
+ !GO (the Gene Ontology)
+
+ *[GO WebPage | http://www.geneontology.org/]
+ *[GO daily terms (OWL format) | http://archive.godatabase.org/latest-termdb/go_daily-termdb.owl.gz]
+
+ !DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering)
+
+ *[DOLCE WebPage | http://www.loa-cnr.it/DOLCE.html]
+ *[DOLCE lite (OWL format) | http://www.loa-cnr.it/ontologies/DLP3971.zip]
+
+ !SWEET (Semantic Web for Earth and Environmental Terminology)
+
+ *[SWEET ontologies (OWL format) | http://sweet.jpl.nasa.gov/ontology]
+
+ !SUO (Standard Upper Ontology)
+
+ *[SUO WebPage | http://suo.ieee.org/]
+ *[SUO Framework | http://suo.ieee.org/IFF/]
+
+ !FMA (Foundational Model of Anatomy)
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- The meeting will begin promptly at 8:00 am in the El Conde/La Condessa Meeting Room located on the 3rd floor of the hotel.
- The hotel does not provide shuttle service from San Antonio International Airport to La Mansion del Rio Hotel. You may book SATrans shuttle [http://www.saairportshuttle.com/] or take a cab. SATrans is $14 one way, $24 round trip. A cab is $18-$20 one way.
+ *[FMA home | http://sig.biostr.washington.edu/projects/fm/index.html]
+ *[Foundational Model Explorer | http://fme.biostr.washington.edu:8089/FME/index.html] is a web-based tool for browsing the ontology
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+ !UCD (Uniform Content Descriptors)
+ *[http://vizier.u-strasbg.fr/doc/UCD/inVizieR.htx]
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- *Matt JOnes
+ *Matt Jones
Removed lines 21-30
-
- !!!Agenda
-
- ! DAY 1 (Monday 31)
-
-
- !DAY 2 (Tuesday 1)
-
-
- !DAY 3 (Wednesday 2)

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