| Lines 2-3 were replaced by lines 2-3 |
| - Where: Room 201 on the second floor of NCEAS, Santa Barbara, California [(805) 892-2500]\\ |
| - Hotel: [Marina Beach Motel|http://www.marinabeachmotel.com/Golf_Frameset.html\\ |
| + Where: Room 201 on the second floor of NCEAS, Santa Barbara, California (805-892-2500)\\ |
| + Hotel: [Marina Beach Motel|http://www.marinabeachmotel.com/index2.htm]\\ |
| Line 8 was replaced by line 8 |
| - From the airport, you may book SuperRide Airport Shuttle [805-683-9636] or take a cab. A cab is $20-$25 one way. |
| + From the airport, you may book SuperRide Airport Shuttle (805-683-9636) or take a cab. A cab is $20-$25 one way (I think). If you have any problems, call Josh on 805-452-7017. |
| Lines 10-16 were replaced by line 10 |
| - !!! Participants (6 budgeted to travel) |
| - *Mark Schildhauer |
| - *Josh Madin |
| - *Shawn Bowers |
| - *Matt JOnes |
| - *Bertram Ludaescher |
| - *Serguei Krivov |
| + !!! Schedule |
| Line 18 was replaced by lines 12-13 |
| - !!!Agenda |
| + !! Sunday, July 30th |
| + * Arrivals |
| Line 20 was replaced by lines 15-143 |
| - ! DAY 1 (Monday 31) |
| + !! Monday, July 31st |
| + * 7:45 am Coffee |
| + * 8:00 am Commence meeting |
| + * 10:00 am Break |
| + * 12:00 Lunch |
| + * 3:00 pm Break |
| + * 5:00 pm Finish for day |
| + |
| + !! Tuesday, August 1st |
| + * 7:45 am Coffee |
| + * 8:00 am Start day |
| + * 10:00 am Break |
| + * 12:00 Lunch |
| + * 3:00 pm Break |
| + * 5:00 pm Finish for day |
| + |
| + !! Wednesday, August 2nd |
| + * 7:45 am Coffee |
| + * 8:00 am Start day |
| + * 10:00 am Break |
| + * 12:00 End meeting |
| + * Departures |
| + |
| + !!! Agenda |
| + ! Priority levels: (''1'') High, (''2'') Medium, (''3'') Low |
| + |
| + !! Wednesday TODO: |
| + * Discuss annotation GUI |
| + ** Kepler or Morpho? |
| + ** Should we move forward creating Kepler actor for "sensible" summarisation without annotation GUI |
| + |
| + !! OBOE (''1'') |
| + * Finalize structure so can begin publication, process, and extension processes [PRETTY MUCH DONE] |
| + ** TREE proposal |
| + ** URL |
| + ** OBOE guide |
| + * Focus will be directed mainly at the Measurement Standard/Units region of the ontology [DONE] |
| + ** We need to come to a concensus about how we are going to represent units for quantitative and qualitative/continuous and discrete unit types [DONE] |
| + * Add copyright/licence (GPL)/restrictions in to OWL ontologies metadata field; enter version IDs. |
| + ** Licence file goes in folder -- get from Morpho |
| + ** Copy right statement in OWL file -- see Morpho documents (GPL) |
| + ** CVS IDs |
| + |
| + __Action items:__\\ |
| + Steps: 1. Implement changes in OWL; 2. Upload to URL; 3. Work on illustraive examples; 4. Draft guide; 5. Submit TREE porposal; 6. Decide name for ontology; \\ |
| + By who: Josh, with help from Shawn\\ |
| + By when: End of August\\ |
| + |
| + !! Extension ontologies (''1'') |
| + * Produce a draft convention for engineering extension ontologies |
| + ** Extension points: Entity, Characteristic, Measurement Standard, and Context |
| + ** Evaluation process |
| + * Producing foundational controlled vocabularies |
| + ** Methods (e.g., text parsing) |
| + ** Browsing (e.g., online thesaurus-type browsing) |
| + * Evaluation and filling-in of foundational controlled vocabulary |
| + ** E.g., public wikipedia-like interface for ecologists to add/edit/debate ecological concepts and relationships |
| + __Action items:__\\ |
| + Steps: 1. Produce SEEK set of high-level extesion ontologies, primarily for illustrative purposes; 2. Write set of instructions/rules for creating extension ontologies for other groups/initiatives.\\ |
| + By who: Josh\\ |
| + By when: End of September\\ |
| + |
| + !! Representing annotations (''1'') |
| + * Discussion of ways to store OBOE data annotations |
| + ** EML extension/new module |
| + ** Short term versus long term considerations |
| + __Action items:__\\ |
| + Steps: 1. Decide on syntax/language for annotation; 2. Develop GUI for annotation; 3. Decide where/how annotation syntax will be saved\\ |
| + By who: Shawn, with help from Josh\\ |
| + By when: End of September\\ |
| + |
| + !! Versioning and backward compatibility issues (''2'') |
| + * E.g., OBOE's constant structural changes have made it hard to create extension ontologies |
| + __Action items:__\\ |
| + Steps: ...\\ |
| + By who: ...\\ |
| + By when: ...\\ |
| + |
| + !! Data summarization (''2'') |
| + * Demostration of summarization capabilities enabled by OBOE |
| + __Action items:__\\ |
| + Steps: 1. Create basic summarization actor in kepler that reads annotation and ...\\ |
| + By who: Josh\\ |
| + By when: End of September\\ |
| + |
| + !! Operation over observations and measurements (''2'') |
| + * Demonstration of compatibility and conversion using OBOE |
| + * Flush out all function necessary for simple data merge |
| + __Action items:__\\ |
| + Steps: 1. \\ |
| + By who: ...\\ |
| + By when: ...\\ |
| + |
| + !! ENM issues (''3'') |
| + * Examine document provided by Deana |
| + *[ENM Document | http://rupert.msi.ucsb.edu/~madin/ENMKRneeds.doc] (DOC) |
| + __Action items:__\\ |
| + Steps: ...\\ |
| + By who: ...\\ |
| + By when: ...\\ |
| + |
| + !!! Links and Ontologies |
| + |
| + *[SEEK WebPage | http://seek.ecoinformatics.org/] |
| + *[NCEAS WebPage | http://www.nceas.ucsb.edu/] |
| + |
| + !OBOE |
| + |
| + *[OBOE and other ontologies in cvs | http://cvs.ecoinformatics.org/cvs/cvsweb.cgi/seek/projects/kr-sms/kr/ontologies/OBOE/] (OWL format) |
| + *[Current incarnation | http://rupert.msi.ucsb.edu/~madin/OBOE_master_3.pdf] (PDF) |
| + |
| + !GO (the Gene Ontology) |
| + |
| + *[GO WebPage | http://www.geneontology.org/] |
| + *[GO daily terms (OWL format) | http://archive.godatabase.org/latest-termdb/go_daily-termdb.owl.gz] |
| + |
| + !DOLCE (Descriptive Ontology for Linguistic and Cognitive Engineering) |
| + |
| + *[DOLCE WebPage | http://www.loa-cnr.it/DOLCE.html] |
| + *[DOLCE lite (OWL format) | http://www.loa-cnr.it/ontologies/DLP3971.zip] |
| + |
| + !SWEET (Semantic Web for Earth and Environmental Terminology) |
| + |
| + *[SWEET ontologies (OWL format) | http://sweet.jpl.nasa.gov/ontology] |
| + |
| + !SUO (Standard Upper Ontology) |
| + |
| + *[SUO WebPage | http://suo.ieee.org/] |
| + *[SUO Framework | http://suo.ieee.org/IFF/] |
| At line 21 added 1 line. |
| + !FMA (Foundational Model of Anatomy) |
| Line 23 was replaced by lines 147-148 |
| - !DAY 2 (Tuesday 1) |
| + *[FMA home | http://sig.biostr.washington.edu/projects/fm/index.html] |
| + *[Foundational Model Explorer | http://fme.biostr.washington.edu:8089/FME/index.html] is a web-based tool for browsing the ontology |
| At line 24 added 2 lines. |
| + !UCD (Uniform Content Descriptors) |
| + *[http://vizier.u-strasbg.fr/doc/UCD/inVizieR.htx] |
| Line 26 was replaced by lines 153-159 |
| - !DAY 3 (Wednesday 2) |
| + !!! Participants (6 budgeted to travel) |
| + *Mark Schildhauer |
| + *Josh Madin |
| + *Shawn Bowers |
| + *Matt Jones |
| + *Bertram Ludaescher |
| + *Serguei Krivov |
