| Line 1 was replaced by line 1 |
| - !!Taxon integration into other SEEK projects |
| + !!! Taxon Application Integration session |
| At line 2 added 2 lines. |
| + Discussion session intended to address the integraiton of taxonomic tools with other components of the SEEK architecture. |
| + |
| Lines 26-28 were replaced by lines 28-85 |
| - ** datasets |
| - ** |
| - |
| + ** mammals is nice small group, name mapping issue is clear |
| + ** 2 issues |
| + *** name expansion |
| + *** misspelling problems |
| + |
| + __Use case__ |
| + * NA mammal niche modeling (can get data with DiGIR query) |
| + ** pick top 5 taxa to model |
| + ** run mammal modeling with and without taxon service/ concept matching |
| + ** need a mammals expert to evaluate results |
| + * western grasses concept data? |
| + ** big societal impact |
| + ** Vegbank should be getting data soon? |
| + |
| + __Engage taxonomists/data creators__ |
| + * encourage addition of concepts/relationships |
| + * catfish project? |
| + * increase use case understanding |
| + * Kepler functions here? |
| + * collaborate with well organized group or NSF funded project that is working on it now? |
| + |
| + !!Tasks |
| + __General__ |
| + * Get real concept data relevant to larger SEEK context |
| + ** BEAM group has identified NA mammals, let's get subset of that - 5 taxa |
| + * Need links between APIs and Ecogrid |
| + ** Reindex existing datasets - ecological and specimen records, modify EML records |
| + ** Query with name for concepts then datasets fro concepts |
| + |
| + __Specific Assignments__ |
| + * Mark Schildhauer: contact Reichman, Willig, and Stevens about mammal concept information |
| + * Deana Pennington: better describe the requirements and intention of the mammal niche modeling case study, with assistance of Nico and Dave |
| + ** Populate concepts for those taxa |
| + ** and identify ecological datasets, markup in EML with Taxonomic Concepts |
| + ** Nico will help from Taxonomic perspective |
| + ** Dave V. will help from Ecogrid perspective |
| + * Identify mechanism/plan for any given scientific study |
| + ** Formulate plan |
| + ** Walk the experts through the concept creation steps |
| + * Create TCS doc for import into SEEK Taxon cache (Nico, Jessie) |
| + * historical concepts/relationships |
| + * integrate functionality of TOS with Ecogrid |
| + ** Incorporate TOS into current data queries |
| + ** term expansion in client for now |
| + ** smart searching - currently divided into 2 searches, need to integrate SMS and Taxonn searching, Shawn thinks - bring it in locally |
| + ** Aggregation node vs individual providers, regularly scheduled updates |
| + ** How do we annotate datasets - metadata generation |
| + * Modify taxonomic part of EML |
| + ** Can use additionalMetadata with no changes to EML tools for experimentation |
| + ** Could use simple name/rank/publication composite key with/without LSID |
| + ** Using only LSID might be best long-term solution |
| + ** Maybe use controlled vocabulary (Smithsonian?) |
| + * Modify Morpho tool which is pulling taxonomic names/info from datasets to use TOS for concept matching |
| + ** Ecological datasets vs specimen datasets |
| + ** How do we interface with ecological dataset creators that don't use Morpho? |
| + * How do we use the rich TOS result to query on DiGIR resources with sparsely populated taxonomic information? |
| + * Annotate Darwin Core records with proxy - LSIDs for specimen records and Concept LSID |
| + * Map between TCS, DarwinCore, EML (Jessie) |
