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| - 1. Observation ontology (OO) – Tuesday |
| - * Objective: to provide a rigorous framework for annotating ecological data with sufficient resolution for data merging and suggesting statistical analysis. |
| + |
| + 1. Observation ontology (ObsOnt) – Tuesday |
| + * Objective: to provide a rigorous framework for annotating ecological data with sufficient resolution for data merging and suggesting potential statistical analysis. |
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| - ** How should taxonomy be integrated? |
| + ** How should taxonomy be integrated? (add a provisional component) |
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| - 2. Textbook parsing project (PP) – Wednesday afternoon |
| + 2. Textbook parsing project (PP) – Wednesday afternoon |
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| + * Begon et al project |
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| + * Wikipedia project |
| + * Developing a glossary (set of terms defined in natural language, including synonyms) |
| + * Controlled vocabulary (list of agreed-upon terms) |
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| - 3. Publications – Thursday afternoon |
| + 3. Publications – Thursday afternoon |
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| - ** Potential journals: |
| - ** TREE: brief overview of the important role ontologies will play in ecological research |
| + * Potential journals: |
| + ** Ecological Applications, Bioscience (others): Ontology guide for ecologists. |
| + ** TREE: brief overview of the important role ontologies will play in ecological research (Use boxes for definitions and examples) |
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| - 4. Bibliography – Throughout meeting |
| + 4. Bibliography – Throughout meeting |
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| - !!! Meeting Notes |
| + 5. Technology surrounding Ontologies (in Kepler) |
| + * What functionality do we need? |
| + ** External ontologies / ontology repository |
| + ** Uploading |
| + ** Editing |
| + ** Naming Conventions |
| + ** Organizing Ontologies (file based? clusters?) |
| + ** Versioning |
| + ** Navigation/access/searching/interacting ontologies |
| + * How to "publish" ontologies |
| + * Annotation mechanisms and grain (dataset, attribute or cell level) |
| + |
| + 6. Units ontology |
| + * Objective: Evaluate how to approach unit identification and conversion; extending derived units; relating units ontology to material ontology; how to add new units |
| + ** Unit.xml in EML and STMML approaches relative to OWL |
| + |
| + 7. Statistical ontology |
| + * Potential statistical analysis inferred from OO |
| + * Linkage to actors |
| + * |
| + |
| + 8. Spatial-Temporal Ontology |
| + * Discuss |
| + |
| + 9. Ecological concepts ontology |
| + |
| + 10. Community effort |
| + |
| + 11. Actor ontology and Kepler customization |
| + |
| + 12. Taxonomy |
| + * Possible to use OWL for taxonomies? |
| + * How to use taxonomies in Kepler? |
| + * Define some of the most compelling use cases... |
| + * Review of Dave's work |
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| + !!! Meeting Notes |
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| - * 8:30 |
| - * 12:00 Lunch |
| + * 9:00 - 11:00 Fleshed out agenda items |
| + * 11:15 - ... Josh on observation ontology |
| + ** Some [notes | KRMeetingJan06Notes] |
| + ** More work on basic observation ontology |
| + ** See [draft|http://cvs.ecoinformatics.org/cvs/cvsweb.cgi/~checkout~/seek/projects/kr-sms/kr/ontologies/drafts/KRMeetingJan06/Observation.owl] |
| + |
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| - * 8:30 |
| - * 12:00 Lunch |
| - |
| + * More on observation ontology; focus on units, dimensions, traits, measurements, etc. |
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| - * ... |
| + * UCD (Uniform Content Descriptors) [http://vizier.u-strasbg.fr/doc/UCD/inVizieR.htx] |
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| + !!! Meeting Summary |
| + |
| + Go here for a summary of the meeting and task deligation. |
| + |
