Science Environment for Ecological Knowledge
Ecoinformatics site parent site of Partnership for Biodiversity Informatics site parent site of SEEK - Home
Science Environment for Ecological Knowledge









 

 

 



Status Report 13 September 2004

This is version 4. It is not the current version, and thus it cannot be edited.
[Back to current version]   [Restore this version]


Summary

Reports are being submitted and will be summarized on Tuesday. If you just submitted a report, it will be at the bottom of this page.

Individual Reports

Trevor Paterson

Current tasks / bugs

  • Completed draft of paper on Abstract Model And Exchange Schema for Taxonomic Concepts
    • sent to some members of seek taxon for comments and information
  • Started work on second paper focussing on the imortance and benefits of using Taxon concepts for ecologists
    • probably ready to send this out to possible coauthors next week
  • Updating TDWG discussion WIKI on proposed draft standard exchange schema
  • Addressing design issues with exchange schema as they arise from SEEK/KU and TDWG community

Martin Graham

Current tasks / bugs

  • Working on new layout for multiple hierarchy visualisation.

Dan Higgins

Current tasks / bugs

  • Working on finding/checking-on bugs in the installer version of kepler (e.g. problem with one of the R examples)
  • Reviewing 'RServer' code as a method for simplifying the Kepler/R insterface and making the transfer of data easier
  • Working on understanding the 'Grass' package as a GIS for Kepler

Liu Xianhua

Current tasks / bugs

  • Editing function of TCBE

Aimee Stewart

Completed tasks / bugs fixed

  • Finished propogating data model changes throughout the code to handle returning either fully defined concepts (with relationships) or incompletely defined concepts (bug 1647).
    • This included defining 2 new relationship classes, and abandoning some unnecessary classes (bug 1677).
  • Modified the CConcept class to more closely align it with the Taxonomic Information Exchange Schema (version 0.8). Propogated changes throughout code.
    • Algorithms were modified to test equality of new members.
  • Minor refactoring was done to simplify the CConcept-related objects.

Current tasks / bugs

  • Tests for algorithms must be modified to match the new CConcept members
  • The parser for enterProviderData has been modified to handle the newest version of the schema. This schema should be relatively stable, so no additional changes are yet planned. The parser is not completed, but at this point, all tests run successfully.
  • Run XSLT transformer provided by Dave Thau
    • Must be modified to produce data for the newest schema version
    • Add resulting data to database using enterProviderData API

Matt Jones

Completed tasks / bugs fixed

  • KNB workshop agenda and planning

Current tasks / bugs

  • Kepler changes in preparation for an alpha3 release
  • Metacat changes in preparation for a release for the KNB workshop
  • Reviewing ontology based searching in Kepler for Chad and Shawn
  • Helping coordinate the ENM pipeline work so that it is finished for the Oct 15 release

Significant issues

  • Jianting Zhang started as a new postdoc at UNM focusing on SEEK work

Nico Franz

Current tasks / bugs

  • Working on "Why GUIDs?" section of GUID/concept manuscript, reviewing common motivations for using GUIDs in science etc.

Jing Tao

Completed tasks / bugs fixed

  • SQL engine for data query in kepler is almost done.

Current tasks / bugs

  • Intergrating querybuilder and sql engine code into kepler.

Significant issues

  • None

Chad Berkley

Completed tasks / bugs fixed

  • Worked with Shawn to get the ontology search engine incorporated into kepler. It now works for a small test ontology in the branch ONTOLOGY_PRELIM of kepler
  • Finished tree restructuring search result handler
    • added search pane as a pluggable interface

Current tasks / bugs

  • Creating bigger ontology for the kepler actor library
  • fixing bugs in the actor tree search interface
  • preparing for 10/15 kepler release
  • looking at search interface to see if it could be extended to make ontology searching easier.

Other Status Reports

You can see the status reports for other time periods as well.



Go to top   More info...   Attach file...
This particular version was published on 13-Sep-2004 16:20:34 PDT by NCEAS.jones.